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circRNA ID
AT1G01320_circ_g.13
Alias
ath_circ_000047, Ath_circ_FC0116, Ath_circ_FC0117
Organism
Arabidpsis thaliana
Position
chr1: 123992-125022  JBrowse»
Reference genome
TAIR10.38
Type  
e-circRNA
Identification method
KNIFE, PcircRNA_finder
Parent gene
Parent gene annotation
Tetratricopeptide repeat (TPR)-like superfamily protein
Parent gene strand
-
Splice junction sequence  
TCGTTCCATATGTAACTGCATCTTCAAGCTTTCCTTTGTCTAAAGCTGTTTTAGATGACTCCAG
AAGTTGCCTTCCATCAGCAGATGAACATGCTGCTTGctgagtacgtaaatcatctggccccagc
tttgctcgaaggattcttaaggttgtttgctcatgctgaacacttaaatggtatgcctccatca
aggagagc
Support reads
4
Tissues
whole_plant
Exon boundary  
Yes-Yes
Splicing signals  
CT-AC
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
CTGAGTACGTAAATCATCTGGCCCCAGCTTTGCTCGAAGGATTCTTAAGGTTGTTTGCTCATGC
TGAACACTTAAATGGTATGCCTCCATCAAGGAGAGCGCAATTGCTATGGCATGGTAGCTTGCAG
CAGTCTGAAATTTGACATAATTAGCAAAATCAAATCAAGTTTCTTACATATTTATGTTCCCAAA
ACAAAAAACGAGCATCGGGAAAAGAACCTGGATATGGTCCGGACCAAGCAACCTTTGATTACAC
TTGAGAGCTTTGTGAAGATACCTCAAGGCAACATGCACATTTCCTAGACCTTCCTCCATCATGG
CTACATTGATGTATGTAGCAGCAGTATTTGGATGAGATGGACCGCATGTGAGATGTAAGAGATA
CAACGCACGCTTAACATACCTAACAAAAACAATCATATCCAGGTTTAGATGATGGAAAGAGACA
TCAAACATTTAAACCATCTAACCTCGCGATTCTTTTAAAATCAAGAGTGCTAAACTTACTTGAG
AGCCAGCTCTGTATGCTGAAGCCTATAATAGAAGACAGCAAGATCACCATAACTCTTCATTGTA
TCTGGATGATCAAGTCCAAGTTCCCTCTCATTGATGTCTAAAGCCTTTTGCTGATATATTGTAG
CCTGTTTTAACAAAATCTTTTAGTTTCACAATTGTCATATAAAGGAAAGATATCACAATCTAAC
CATATAATATATACAGACCTGGTTAAAGTCACCAGTGTGATATAGAACCACAGCAAGTAAACTG
TAAGCTCCGGCTGTCATTCTGTGATAGGGACCGCAAACTGCTACGAGTTTAGCAAGAGCCTAAT
GGAGGAAAAAAAGAAAGAGACAAAACAACAAAACAAAATCATGACGCTGTATAAAAAACAAGTA
ATATGAAGAAATAGCTGAGGAGTAGACATGGACCTTCGTTCCATATGTAACTGCATCTTCAAGC
TTTCCTTTGTCTAAAGCTGTTTTAGATGACTCCAGAAGTTGCCTTCCATCAGCAGATGAACATG
CTGCTTG
Number of exons covered
AT1G01320.1:5
AT1G01320.3:5
AT1G01320.2:5
Conserved circRNAs
NA
Coding potential
Y
Potential coding position
124777-123994(-)
Potential amino acid sequence
MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELA
LKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQT
AASYHAIAIALSLMEAYHLSVQHEQTTLRILRAKLGPDDLRTQQAACSSADGRQLLESSKTALD
KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL
GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG
NVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYHLSVQHEQTTLRILRAKLGP
DDLRTQQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLA
VVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL
LHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIA
LSLMEAYHLSVQHEQTTLRILRAKLGPDDLRTQQAACSSADGRQLLESSKTALDKGKLEDAVTY
GTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKS
YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLH
KALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYHLSVQHEQTTLRILRAKLGPDDLRTQ(-)
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Chu et al., 2017;Chen et al., 2017

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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