logo





circRNA ID
AT1G01320_circ_g.20
Alias
ath_circ_000054, At_ciR5366, Ath_circ_FC0119, Ath_circ_FC0361, Ath_circ_FC5544
Organism
Arabidpsis thaliana
Position
chr1: 125742-127573  JBrowse»
Reference genome
TAIR10.38
Type  
e-circRNA
Identification method
find_circ
Parent gene
Parent gene annotation
Tetratricopeptide repeat (TPR)-like superfamily protein
Parent gene strand
-
Splice junction sequence  
CATTAACTGCACCCAATTCAAACATCCACTAAATCCTCATTCAGATAGAGAAATATACCTTATT
GCGCTCCGAAAATGCTTTCAGAAGATCACTGTAAGCaacatatcctaaagaacgcatccgaaga
cctcttgtgtgcataaaatcagttagagtccggccatcgactggggagagctccaatgaaccaa
aatctgca
Support reads
2
Tissues
leaf
Exon boundary  
Yes-Yes
Splicing signals  
CT-AC
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
AACATATCCTAAAGAACGCATCCGAAGACCTCTTGTGTGCATAAAATCAGTTAGAGTCCGGCCA
TCGACTGGGGAGAGCTCCAATGAACCAAAATCTGCAACCTGCATTCCGTGATAAAAGAAAATTC
GCATGATTTGTTACTATTTTAATACTACCAATAGACAACACTACAACAAAATTTAGACTCATTT
ACCAGTTTCGGAATAGCAACTTCAGTATAATAATTCTGTGCCAAGTCGACAAGTTCTTGCAAAG
ACTGGAGCAAATATTCTTAGTTAGCACACAATTAAGTAAATAAACATAGAGCAACAAATTGAAG
TTGTAGTGTAAAACCTTGTGATGAAGTCCAGTATCTGACTCTTTTAGGCGAGTGAAGGCTGCAT
CAGACAACAAATTCTTCAAGATGAGCACATTTTCTTGAGCATTCTTCTCAGCATCGGATTGCAA
AGATGCAGCAGTATCAGCCTCTGAAGAAACCGCATCGACTTGAGACGATAATGCAGTCTGCGGC
GTCTTAGGGCTGCTCACATCTGTTTTCTTTTTGCTGCTATTGAGGGACTTAAGCGGTTTCCCAA
GCCCTTCAACCTTCAATTCATTCTTAGACTTTTCACCGGTTTGTTTTTTGTCCTTTTCTGTATT
CTTTTGGTCTTGTAAATGCTGTATCCAACAAGCTCCAAGCTCCCATCTCATGATACTATCCCTG
TCTATCTCCTCTCCCTCAAGCTTAGCAATGCTTTCTTCCAGCATTTTACTTACAAATTCCCGTG
AAGATGTAAGTTCATCATCGTGTTGCTGAGGTGTTTTCTTGTTCTGCTCAGGAGAGGATTTATG
GAGAAGGAATCTCAAACTGTAAAACAACATCAAAAAAAAGTTACACAGTAATTAACAAATACGC
TAAAGAGACAAAAGATGAATGTCTTTTCATTAAGTAAGAAATTATCACCTATTGATATTTAGAG
CATTAGCACCACCTTCAGGCTGTTCAAGGAGGTCAACAATTTGAGAAGGTGGGCTTAACTCCTC
ACTCTCCTTCTCTAATTTCACAACAGCAATGTAACCACAGTACTTAAGACTTATAGTTCCTAAA
GTAGCAACGTCCTGCACCCATTGTAAAACCACAGTTAAAACAATACAGATGAGGAAACAAAAAA
TTAAACATGGAAAAAGTGGGGAAGGTTTAAAAAACACTGACATGAGCAGCAGTATTTTCATCAG
CTGTAAGTCCCTTGAGAAGGTTCCGTTCCATCAGCTTCTTTTTATCCAAACCAGTGGCTTGAAT
TCCATCGATTTTTGTATCCACTTTACTACTTGCATTTGAAGTATCCCTTGTAACCGTAACAGTC
AAGTCTCTAACTGTCTCGGAATAGAGAACTTCGGAGTCTTCTTCAGCCAGTACTGGCTCAGCCA
TTACTTTCTGAACAGCCTTGATGGCTCTGAAAGTCGCGACATCAACAAAGAGGTTGTGAAGAAG
AAACACTTTTCTGTCTCTGACTTGTCTCTCCTCTGCTGTTTTGCAAGGCATAGATGCGATAAAG
GCGAATTCGTTGGACCATGGAACCAAGTCGTAGCTGCCATCTCTCCCTTGACCACCACCATCCC
CTCCCCATCTCTCATCCTCAACAGGGAGAGGCGGAAACGCTGCTGGTGACTGCGCCGCAGTAGG
CGGGATGAGCCATGTGTTAGCTCTAAACCCATATGGAAGATTTCCAAACTGCAAATAAATGAAA
TACTCATTAACTGCACCCAATTCAAACATCCACTAAATCCTCATTCAGATAGAGAAATATACCT
TATTGCGCTCCGAAAATGCTTTCAGAAGATCACTGTAAGC
Number of exons covered
AT1G01320.2:6
AT1G01320.1:6
AT1G01320.3:6
Conserved circRNAs
NA
Coding potential
Y
Potential coding position
127265-125744(-)
Potential amino acid sequence
MPCKTAEERQVRDRKVFLLHNLFVDVATFRAIKAVQKVMAEPVLAEEDSEVLYSETVRDLTVTV
TRDTSNASSKVDTKIDGIQATGLDKKKLMERNLLKGLTADENTAAHDVATLGTISLKYCGYIAV
VKLEKESEELSPPSQIVDLLEQPEGGANALNINSLRFLLHKSSPEQNKKTPQQHDDELTSSREF
VSKMLEESIAKLEGEEIDRDSIMRWELGACWIQHLQDQKNTEKDKKQTGEKSKNELKVEGLGKP
LKSLNSSKKKTDVSSPKTPQTALSSQVDAVSSEADTAASLQSDAEKNAQENVLILKNLLSDAAF
TRLKESDTGLHHKSLQELVDLAQNYYTEVAIPKLVADFGSLELSPVDGRTLTDFMHTRGLRMRS
LGYVAYSDLLKAFSERNKFGNLPYGFRANTWLIPPTAAQSPAAFPPLPVEDERWGGDGGGQGRD
GSYDLVPWSNEFAFIASMPCKTAEERQVRDRKVFLLHNLFVDVATFRAIKAVQKVMAEPVLAEE
DSEVLYSETVRDLTVTVTRDTSNASSKVDTKIDGIQATGLDKKKLMERNLLKGLTADENTAAHD
VATLGTISLKYCGYIAVVKLEKESEELSPPSQIVDLLEQPEGGANALNINSLRFLLHKSSPEQN
KKTPQQHDDELTSSREFVSKMLEESIAKLEGEEIDRDSIMRWELGACWIQHLQDQKNTEKDKKQ
TGEKSKNELKVEGLGKPLKSLNSSKKKTDVSSPKTPQTALSSQVDAVSSEADTAASLQSDAEKN
AQENVLILKNLLSDAAFTRLKESDTGLHHKSLQELVDLAQNYYTEVAIPKLVADFGSLELSPVD
GRTLTDFMHTRGLRMRSLGYVAYSDLLKAFSERNKFGNLPYGFRANTWLIPPTAAQSPAAFPPL
PVEDERWGGDGGGQGRDGSYDLVPWSNEFAFIASMPCKTAEERQVRDRKVFLLHNLFVDVATFR
AIKAVQKVMAEPVLAEEDSEVLYSETVRDLTVTVTRDTSNASSKVDTKIDGIQATGLDKKKLME
RNLLKGLTADENTAAHDVATLGTISLKYCGYIAVVKLEKESEELSPPSQIVDLLEQPEGGANAL
NINSLRFLLHKSSPEQNKKTPQQHDDELTSSREFVSKMLEESIAKLEGEEIDRDSIMRWELGAC
WIQHLQDQKNTEKDKKQTGEKSKNELKVEGLGKPLKSLNSSKKKTDVSSPKTPQTALSSQVDAV
SSEADTAASLQSDAEKNAQENVLILKNLLSDAAFTRLKESDTGLHHKSLQELVDLAQNYYTEVA
IPKLVADFGSLELSPVDGRTLTDFMHTRGLRMRSLGYVAYSDLLKAFSERNKFGNLPYGFRANT
WLIPPTAAQSPAAFPPLPVEDERWGGDGGGQGRDGSYDLVPWSNEFAFIASMPCKTAEERQVRD
RKVFLLHNLFVDVATFRAIKAVQKVMAEPVLAEEDSEVLYSETVRDLTVTVTRDTSNASSKVDT
KIDGIQATGLDKKKLMERNLLKGLTADENTAAHDVATLGTISLKYCGYIAVVKLEKESEELSPP
SQIVDLLEQPEGGANALNINSLRFLLHKSSPEQNKKTPQQHDDELTSSREFVSKMLEESIAKLE
GEEIDRDSIMRWELGACWIQHLQDQKNTEKDKKQTGEKSKNELKVEGLGKPLKSLNSSKKKTDV
SSPKTPQTALSSQVDAVSSEADTAASLQSDAEKNAQENVLILKNLLSDAAFTRLKESDTGLHHK
SLQELVDLAQNYYTEVAIPKLVADFGSLELSPVDGRTLTDFMHTRGLRMRSLGYV(-)
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Ye et al., 2015;Chen et al., 2017

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

Supported by   nsfc    zju