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circRNA ID
AT1G01320_circ_g.9
Alias
ath_circ_000043, At_ciR4979
Organism
Arabidpsis thaliana
Position
chr1: 123579-124632  JBrowse»
Reference genome
TAIR10.38
Type  
e-circRNA
Identification method
find_circ
Parent gene
Parent gene annotation
Tetratricopeptide repeat (TPR)-like superfamily protein
Parent gene strand
-
Splice junction sequence  
AGAAGACAGCAAGATCACCATAACTCTTCATTGTATCTGGATGATCAAGTCCAAGTTCCCTCTC
ATTGATGTCTAAAGCCTTTTGCTGATATATTGTAGCcttcagaatatagttcttcctctttgct
gccacgctctctttgccttttgcgttatgacttgggttgatatagtcgagtagatcggaaacac
tgcaaaac
Support reads
2
Tissues
leaf
Exon boundary  
Yes-Yes
Splicing signals  
CT-AC
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
CTTCAGAATATAGTTCTTCCTCTTTGCTGCCACGCTCTCTTTGCCTTTTGCGTTATGACTTGGG
TTGATATAGTCGAGTAGATCGGAAACACTGCAAAACATTATCAACTTAAGGATCTGGCCAAGGA
GTACACTTAATTGACACATTCAAACAAAATAAAAAACTTATAAACAACAAATAAGGAGATATCA
GAAAGTTGTTTGACCTTAGGTGGCCTTTGCTGGCTATAGACGCGTCTGGCTTAGGAGTACCATT
TCGCGCAGCTTCTTGTTGTTCAAAAGCCTTGGACTCAAAGTATTCTAGCCAAGCAGCAGCATCC
TGAACCATATAATCAATTGTCAAACTTAAAGAATGCATACAGTTGTCAGAAAGATGACTAATTT
GGCTGATAGGATATCATGATAATATATACCTGAGTACGTAAATCATCTGGCCCCAGCTTTGCTC
GAAGGATTCTTAAGGTTGTTTGCTCATGCTGAACACTTAAATGGTATGCCTCCATCAAGGAGAG
CGCAATTGCTATGGCATGGTAGCTTGCAGCAGTCTGAAATTTGACATAATTAGCAAAATCAAAT
CAAGTTTCTTACATATTTATGTTCCCAAAACAAAAAACGAGCATCGGGAAAAGAACCTGGATAT
GGTCCGGACCAAGCAACCTTTGATTACACTTGAGAGCTTTGTGAAGATACCTCAAGGCAACATG
CACATTTCCTAGACCTTCCTCCATCATGGCTACATTGATGTATGTAGCAGCAGTATTTGGATGA
GATGGACCGCATGTGAGATGTAAGAGATACAACGCACGCTTAACATACCTAACAAAAACAATCA
TATCCAGGTTTAGATGATGGAAAGAGACATCAAACATTTAAACCATCTAACCTCGCGATTCTTT
TAAAATCAAGAGTGCTAAACTTACTTGAGAGCCAGCTCTGTATGCTGAAGCCTATAATAGAAGA
CAGCAAGATCACCATAACTCTTCATTGTATCTGGATGATCAAGTCCAAGTTCCCTCTCATTGAT
GTCTAAAGCCTTTTGCTGATATATTGTAGC
Number of exons covered
AT1G01320.1:5
AT1G01320.3:5
AT1G01320.2:5
Conserved circRNAs
NA
Coding potential
Y
Potential coding position
124564-123581(-)
Potential amino acid sequence
MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALR
YLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYHLSVQHEQTTLRILRAKLGPDDLRTQD
AAAWLEYFESKAFEQQEAARNGTPKPDASIASKGHLSVSDLLDYINPSHNAKGKESVAAKRKNY
ILKATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS
HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYH
LSVQHEQTTLRILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTPKPDASIASKGHLSV
SDLLDYINPSHNAKGKESVAAKRKNYILKATIYQQKALDINERELGLDHPDTMKSYGDLAVFYY
RLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL
LGPDHIQTAASYHAIAIALSLMEAYHLSVQHEQTTLRILRAKLGPDDLRTQDAAAWLEYFESKA
FEQQEAARNGTPKPDASIASKGHLSVSDLLDYINPSHNAKGKESVAAKRKNYILKATIYQQKAL
DINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVA
MMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYHLSVQHEQTTLRI
LRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTPKPDASIASKGHLSVSDLLDYINPSHN
AKGKESVAAKRKNYILK(-)
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Ye et al., 2015

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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