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circRNA ID
AT1G01320_circ_g.15
Alias
ath_circ_000049, 1:124248-124394
Organism
Arabidpsis thaliana
Position
chr1: 124248-124394  JBrowse»
Reference genome
TAIR10.38
Type  
e-circRNA
Identification method
find_circ; CIRI2
Parent gene
Parent gene annotation
Tetratricopeptide repeat (TPR)-like superfamily protein
Parent gene strand
-
Splice junction sequence  
GTATGTAGCAGCAGTATTTGGATGAGATGGACCGCATGTGAGATGTAAGAGATACAACGCACGC
TTAACATACttgagagctttgtgaagatacctcaaggcaacatgcacatttcctagaccttcct
ccatcatggctacattgat
Support reads
2/1/2
Tissues
seedling;flower
Exon boundary  
No-Yes
Splicing signals  
CT-AC
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
TTGAGAGCTTTGTGAAGATACCTCAAGGCAACATGCACATTTCCTAGACCTTCCTCCATCATGG
CTACATTGATGTATGTAGCAGCAGTATTTGGATGAGATGGACCGCATGTGAGATGTAAGAGATA
CAACGCACGCTTAACATAC
Number of exons covered
AT1G01320.2:1
AT1G01320.1:1
AT1G01320.3:1
Conserved circRNAs
NA
Coding potential
NA
Potential coding position
NA
Potential amino acid sequence
NA
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Philips et al., 2020

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Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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