logo





circRNA ID
AT1G01320_circ_g.25
Alias
ath_circ_000059
Organism
Arabidpsis thaliana
Position
chr1: 128028-128312  JBrowse»
Reference genome
TAIR10.38
Type  
e-circRNA
Identification method
KNIFE, PcircRNA_finder, circRNA_finder, find_circ
Parent gene
Parent gene annotation
Tetratricopeptide repeat (TPR)-like superfamily protein
Parent gene strand
-
Splice junction sequence  
GAGTCTGATTTCTCCGGCGACGGACCGAAGCAAGTGGTACAGGCGACGATGTCAAGCAGCCGTC
TAACGTGCGCCACTGCTGTTCCTTCATTGTAATCCTattgaagaggaggagtgagatgagcgag
agagaaaaactcgtagaaacttccaagcttagggaaagagtggctagtctctccggcttcatca
accacagt
Support reads
9
Tissues
whole_plant
Exon boundary  
Yes-Yes
Splicing signals  
CT-AC
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
ATTGAAGAGGAGGAGTGAGATGAGCGAGAGAGAAAAACTCGTAGAAACTTCCAAGCTTAGGGAA
AGAGTGGCTAGTCTCTCCGGCTTCATCAACCACAGTATCCTTCGACGCAGGAGACGGCGGAGGC
GACGTATCCGACTGTTTAGAATTCTTTCCACCTCCCTTAACCTGCGCACTTTTCACGGAGTCTG
ATTTCTCCGGCGACGGACCGAAGCAAGTGGTACAGGCGACGATGTCAAGCAGCCGTCTAACGTG
CGCCACTGCTGTTCCTTCATTGTAATCCT
Number of exons covered
AT1G01320.3:1
AT1G01320.2:1
AT1G01320.1:1
Conserved circRNAs
NA
Coding potential
N
Potential coding position
NA
Potential amino acid sequence
NA
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Chu et al., 2017

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

Supported by   nsfc    zju