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circRNA ID
AT1G01320_circ_g.11
Alias
ath_circ_000045, At_ciR3339
Organism
Arabidpsis thaliana
Position
chr1: 123579-127573  JBrowse»
Reference genome
TAIR10.38
Type  
e-circRNA
Identification method
find_circ
Parent gene
Parent gene annotation
Tetratricopeptide repeat (TPR)-like superfamily protein
Parent gene strand
-
Splice junction sequence  
CATTAACTGCACCCAATTCAAACATCCACTAAATCCTCATTCAGATAGAGAAATATACCTTATT
GCGCTCCGAAAATGCTTTCAGAAGATCACTGTAAGCcttcagaatatagttcttcctctttgct
gccacgctctctttgccttttgcgttatgacttgggttgatatagtcgagtagatcggaaacac
tgcaaaac
Support reads
2
Tissues
leaf
Exon boundary  
Yes-Yes
Splicing signals  
CT-AC
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
CTTCAGAATATAGTTCTTCCTCTTTGCTGCCACGCTCTCTTTGCCTTTTGCGTTATGACTTGGG
TTGATATAGTCGAGTAGATCGGAAACACTGCAAAACATTATCAACTTAAGGATCTGGCCAAGGA
GTACACTTAATTGACACATTCAAACAAAATAAAAAACTTATAAACAACAAATAAGGAGATATCA
GAAAGTTGTTTGACCTTAGGTGGCCTTTGCTGGCTATAGACGCGTCTGGCTTAGGAGTACCATT
TCGCGCAGCTTCTTGTTGTTCAAAAGCCTTGGACTCAAAGTATTCTAGCCAAGCAGCAGCATCC
TGAACCATATAATCAATTGTCAAACTTAAAGAATGCATACAGTTGTCAGAAAGATGACTAATTT
GGCTGATAGGATATCATGATAATATATACCTGAGTACGTAAATCATCTGGCCCCAGCTTTGCTC
GAAGGATTCTTAAGGTTGTTTGCTCATGCTGAACACTTAAATGGTATGCCTCCATCAAGGAGAG
CGCAATTGCTATGGCATGGTAGCTTGCAGCAGTCTGAAATTTGACATAATTAGCAAAATCAAAT
CAAGTTTCTTACATATTTATGTTCCCAAAACAAAAAACGAGCATCGGGAAAAGAACCTGGATAT
GGTCCGGACCAAGCAACCTTTGATTACACTTGAGAGCTTTGTGAAGATACCTCAAGGCAACATG
CACATTTCCTAGACCTTCCTCCATCATGGCTACATTGATGTATGTAGCAGCAGTATTTGGATGA
GATGGACCGCATGTGAGATGTAAGAGATACAACGCACGCTTAACATACCTAACAAAAACAATCA
TATCCAGGTTTAGATGATGGAAAGAGACATCAAACATTTAAACCATCTAACCTCGCGATTCTTT
TAAAATCAAGAGTGCTAAACTTACTTGAGAGCCAGCTCTGTATGCTGAAGCCTATAATAGAAGA
CAGCAAGATCACCATAACTCTTCATTGTATCTGGATGATCAAGTCCAAGTTCCCTCTCATTGAT
GTCTAAAGCCTTTTGCTGATATATTGTAGCCTGTTTTAACAAAATCTTTTAGTTTCACAATTGT
CATATAAAGGAAAGATATCACAATCTAACCATATAATATATACAGACCTGGTTAAAGTCACCAG
TGTGATATAGAACCACAGCAAGTAAACTGTAAGCTCCGGCTGTCATTCTGTGATAGGGACCGCA
AACTGCTACGAGTTTAGCAAGAGCCTAATGGAGGAAAAAAAGAAAGAGACAAAACAACAAAACA
AAATCATGACGCTGTATAAAAAACAAGTAATATGAAGAAATAGCTGAGGAGTAGACATGGACCT
TCGTTCCATATGTAACTGCATCTTCAAGCTTTCCTTTGTCTAAAGCTGTTTTAGATGACTCCAG
AAGTTGCCTTCCATCAGCAGATGAACATGCTGCTTGCTGCATAGATTTAAAATAGAAAGTCTGA
ATAACTATGGCTGACTAACATATTAGAAAGAATCCTGATTCAGATAGAACATTTTTCCTAATAT
CTATTGTCTTGTCCGTTACCTTATGCACTGGGACAAGACTAACCACATCTGTTTTCCGGAAAGG
TGCAGGAGAATCCATGTCAAAGTCCCTTGGAATCAACTCAATACCAACCTGACAAATAAAATTT
AAATCACAATTTCATTAGTCAATATAGTAATTAGCAACAACTTTATAACTCAATCAAATTTTCG
GGTTAGAGCATTCATAAATTACCTTATGGCATAAGCCTCGGAGAATGGCAAACTTCCGTAGATC
CTTGTAACTGAAGGCATTAAGATCATAATCATACCGTTTCTTCAAGAATTTCTCCAACCATCGG
AAGATCAGAGGATGTACATTCCAAGGGTTATGTGGTGTTGCTGCAACATTTTCAGGAATCCCAA
GCATCATGTTCAAAGCAGCAGCTACTTTTATAGCTATTTTGTCAGTGTCAGTAGCAACAGCAGA
AATCACCGCCTGGAGGATATGCTTAAGGGCTCTTACTATCATCTCATGAACACACAGCGATTGT
ACATGTGACAATTTATCTGAAAGCTTCACCTATTGTCACCATAAAAAAGATATGGATGATCAAA
ATTCATCTTGAATAGTTTCTAAGAAACACGAGGTTAAGAAAGCCAACTTACAACATATCCTAAA
GAACGCATCCGAAGACCTCTTGTGTGCATAAAATCAGTTAGAGTCCGGCCATCGACTGGGGAGA
GCTCCAATGAACCAAAATCTGCAACCTGCATTCCGTGATAAAAGAAAATTCGCATGATTTGTTA
CTATTTTAATACTACCAATAGACAACACTACAACAAAATTTAGACTCATTTACCAGTTTCGGAA
TAGCAACTTCAGTATAATAATTCTGTGCCAAGTCGACAAGTTCTTGCAAAGACTGGAGCAAATA
TTCTTAGTTAGCACACAATTAAGTAAATAAACATAGAGCAACAAATTGAAGTTGTAGTGTAAAA
CCTTGTGATGAAGTCCAGTATCTGACTCTTTTAGGCGAGTGAAGGCTGCATCAGACAACAAATT
CTTCAAGATGAGCACATTTTCTTGAGCATTCTTCTCAGCATCGGATTGCAAAGATGCAGCAGTA
TCAGCCTCTGAAGAAACCGCATCGACTTGAGACGATAATGCAGTCTGCGGCGTCTTAGGGCTGC
TCACATCTGTTTTCTTTTTGCTGCTATTGAGGGACTTAAGCGGTTTCCCAAGCCCTTCAACCTT
CAATTCATTCTTAGACTTTTCACCGGTTTGTTTTTTGTCCTTTTCTGTATTCTTTTGGTCTTGT
AAATGCTGTATCCAACAAGCTCCAAGCTCCCATCTCATGATACTATCCCTGTCTATCTCCTCTC
CCTCAAGCTTAGCAATGCTTTCTTCCAGCATTTTACTTACAAATTCCCGTGAAGATGTAAGTTC
ATCATCGTGTTGCTGAGGTGTTTTCTTGTTCTGCTCAGGAGAGGATTTATGGAGAAGGAATCTC
AAACTGTAAAACAACATCAAAAAAAAGTTACACAGTAATTAACAAATACGCTAAAGAGACAAAA
GATGAATGTCTTTTCATTAAGTAAGAAATTATCACCTATTGATATTTAGAGCATTAGCACCACC
TTCAGGCTGTTCAAGGAGGTCAACAATTTGAGAAGGTGGGCTTAACTCCTCACTCTCCTTCTCT
AATTTCACAACAGCAATGTAACCACAGTACTTAAGACTTATAGTTCCTAAAGTAGCAACGTCCT
GCACCCATTGTAAAACCACAGTTAAAACAATACAGATGAGGAAACAAAAAATTAAACATGGAAA
AAGTGGGGAAGGTTTAAAAAACACTGACATGAGCAGCAGTATTTTCATCAGCTGTAAGTCCCTT
GAGAAGGTTCCGTTCCATCAGCTTCTTTTTATCCAAACCAGTGGCTTGAATTCCATCGATTTTT
GTATCCACTTTACTACTTGCATTTGAAGTATCCCTTGTAACCGTAACAGTCAAGTCTCTAACTG
TCTCGGAATAGAGAACTTCGGAGTCTTCTTCAGCCAGTACTGGCTCAGCCATTACTTTCTGAAC
AGCCTTGATGGCTCTGAAAGTCGCGACATCAACAAAGAGGTTGTGAAGAAGAAACACTTTTCTG
TCTCTGACTTGTCTCTCCTCTGCTGTTTTGCAAGGCATAGATGCGATAAAGGCGAATTCGTTGG
ACCATGGAACCAAGTCGTAGCTGCCATCTCTCCCTTGACCACCACCATCCCCTCCCCATCTCTC
ATCCTCAACAGGGAGAGGCGGAAACGCTGCTGGTGACTGCGCCGCAGTAGGCGGGATGAGCCAT
GTGTTAGCTCTAAACCCATATGGAAGATTTCCAAACTGCAAATAAATGAAATACTCATTAACTG
CACCCAATTCAAACATCCACTAAATCCTCATTCAGATAGAGAAATATACCTTATTGCGCTCCGA
AAATGCTTTCAGAAGATCACTGTAAGC
Number of exons covered
AT1G01320.2:15
AT1G01320.3:15
AT1G01320.1:15
Conserved circRNAs
NA
Coding potential
Y
Potential coding position
127265-123581(-)
Potential amino acid sequence
MPCKTAEERQVRDRKVFLLHNLFVDVATFRAIKAVQKVMAEPVLAEEDSEVLYSETVRDLTVTV
TRDTSNASSKVDTKIDGIQATGLDKKKLMERNLLKGLTADENTAAHDVATLGTISLKYCGYIAV
VKLEKESEELSPPSQIVDLLEQPEGGANALNINSLRFLLHKSSPEQNKKTPQQHDDELTSSREF
VSKMLEESIAKLEGEEIDRDSIMRWELGACWIQHLQDQKNTEKDKKQTGEKSKNELKVEGLGKP
LKSLNSSKKKTDVSSPKTPQTALSSQVDAVSSEADTAASLQSDAEKNAQENVLILKNLLSDAAF
TRLKESDTGLHHKSLQELVDLAQNYYTEVAIPKLVADFGSLELSPVDGRTLTDFMHTRGLRMRS
LGYVVKLSDKLSHVQSLCVHEMIVRALKHILQAVISAVATDTDKIAIKVAAALNMMLGIPENVA
ATPHNPWNVHPLIFRWLEKFLKKRYDYDLNAFSYKDLRKFAILRGLCHKVGIELIPRDFDMDSP
APFRKTDVVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHR
MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELA
LKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQT
AASYHAIAIALSLMEAYHLSVQHEQTTLRILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAAR
NGTPKPDASIASKGHLSVSDLLDYINPSHNAKGKESVAAKRKNYILKAYSDLLKAFSERNKFGN
LPYGFRANTWLIPPTAAQSPAAFPPLPVEDERWGGDGGGQGRDGSYDLVPWSNEFAFIASMPCK
TAEERQVRDRKVFLLHNLFVDVATFRAIKAVQKVMAEPVLAEEDSEVLYSETVRDLTVTVTRDT
SNASSKVDTKIDGIQATGLDKKKLMERNLLKGLTADENTAAHDVATLGTISLKYCGYIAVVKLE
KESEELSPPSQIVDLLEQPEGGANALNINSLRFLLHKSSPEQNKKTPQQHDDELTSSREFVSKM
LEESIAKLEGEEIDRDSIMRWELGACWIQHLQDQKNTEKDKKQTGEKSKNELKVEGLGKPLKSL
NSSKKKTDVSSPKTPQTALSSQVDAVSSEADTAASLQSDAEKNAQENVLILKNLLSDAAFTRLK
ESDTGLHHKSLQELVDLAQNYYTEVAIPKLVADFGSLELSPVDGRTLTDFMHTRGLRMRSLGYV
VKLSDKLSHVQSLCVHEMIVRALKHILQAVISAVATDTDKIAIKVAAALNMMLGIPENVAATPH
NPWNVHPLIFRWLEKFLKKRYDYDLNAFSYKDLRKFAILRGLCHKVGIELIPRDFDMDSPAPFR
KTDVVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAG
AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYV
KRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASY
HAIAIALSLMEAYHLSVQHEQTTLRILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTP
KPDASIASKGHLSVSDLLDYINPSHNAKGKESVAAKRKNYILKAYSDLLKAFSERNKFGNLPYG
FRANTWLIPPTAAQSPAAFPPLPVEDERWGGDGGGQGRDGSYDLVPWSNEFAFIASMPCKTAEE
RQVRDRKVFLLHNLFVDVATFRAIKAVQKVMAEPVLAEEDSEVLYSETVRDLTVTVTRDTSNAS
SKVDTKIDGIQATGLDKKKLMERNLLKGLTADENTAAHDVATLGTISLKYCGYIAVVKLEKESE
ELSPPSQIVDLLEQPEGGANALNINSLRFLLHKSSPEQNKKTPQQHDDELTSSREFVSKMLEES
IAKLEGEEIDRDSIMRWELGACWIQHLQDQKNTEKDKKQTGEKSKNELKVEGLGKPLKSLNSSK
KKTDVSSPKTPQTALSSQVDAVSSEADTAASLQSDAEKNAQENVLILKNLLSDAAFTRLKESDT
GLHHKSLQELVDLAQNYYTEVAIPKLVADFGSLELSPVDGRTLTDFMHTRGLRMRSLGYVVKLS
DKLSHVQSLCVHEMIVRALKHILQAVISAVATDTDKIAIKVAAALNMMLGIPENVAATPHNPWN
VHPLIFRWLEKFLKKRYDYDLNAFSYKDLRKFAILRGLCHKVGIELIPRDFDMDSPAPFRKTDV
VSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSL
LAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRAL
YLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIA
IALSLMEAYHLSVQHEQTTLRILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTPKPDA
SIASKGHLSVSDLLDYINPSHNAKGKESVAAKRKNYILKAYSDLLKAFSERNKFGNLPYGFRAN
TWLIPPTAAQSPAAFPPLPVEDERWGGDGGGQGRDGSYDLVPWSNEFAFIASMPCKTAEERQVR
DRKVFLLHNLFVDVATFRAIKAVQKVMAEPVLAEEDSEVLYSETVRDLTVTVTRDTSNASSKVD
TKIDGIQATGLDKKKLMERNLLKGLTADENTAAHDVATLGTISLKYCGYIAVVKLEKESEELSP
PSQIVDLLEQPEGGANALNINSLRFLLHKSSPEQNKKTPQQHDDELTSSREFVSKMLEESIAKL
EGEEIDRDSIMRWELGACWIQHLQDQKNTEKDKKQTGEKSKNELKVEGLGKPLKSLNSSKKKTD
VSSPKTPQTALSSQVDAVSSEADTAASLQSDAEKNAQENVLILKNLLSDAAFTRLKESDTGLHH
KSLQELVDLAQNYYTEVAIPKLVADFGSLELSPVDGRTLTDFMHTRGLRMRSLGYVVKLSDKLS
HVQSLCVHEMIVRALKHILQAVISAVATDTDKIAIKVAAALNMMLGIPENVAATPHNPWNVHPL
IFRWLEKFLKKRYDYDLNAFSYKDLRKFAILRGLCHKVGIELIPRDFDMDSPAPFRKTDVVSLV
PVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVV
LYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLH
LTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALS
LMEAYHLSVQHEQTTLRILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTPKPDASIAS
KGHLSVSDLLDYINPSHNAKGKESVAAKRKNYILK(-)
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Ye et al., 2015

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Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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