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Oryza sativa

Oryza sativa

40,314 circRNAs
Arabidopsis thaliana

Arabidopsis thaliana

38,938 circRNAs
Zea mays

Zea mays

3,267 circRNAs
Solanum lycopersicum

Solanum lycopersicum

1,472 circRNAs
Glycine max

Glycine max

5,372 circRNAs
Gossypium hirsutum

Gossypium hirsutum

499 circRNAs
Triticum aestivum

Triticum aestivum

88 circRNAs
Hordeum vulgare

Hordeum vulgare

47 circRNAs

News

2017-12-22 NEW!

    PlantcircBase Release 2 online!

2017-01-24

    PlantcircBase Release 1 online!

2016-10-09

    PlantcircBase beta version released!


Releases

Release 2 NEW!

    Eight organisms, 89,997 circRNAs.

Release 1

    Five organisms, 77,595 circRNAs.


In Plant Circular RNA Database (PlantcircBase), we collected publicly available back-splice junction sequences and their full-length sequences of circRNAs identified in plants by us and other groups. Based on the collected circRNAs, we further predicted those circRNAs putatively acting as miRNA sponges and their potential networks involving circRNA-miRNA-mRNA in the corresponding species. In the database, you can find plant circRNAs and their related information, such as their sequences, host genes, expression, experimental validation as well as bioinformatics tools for visualizing circRNA structures and predicting circRNAs from query sequences.

Read more >>


Visiters



         CiteUs

Qinjie Chu, Xingchen Zhang, Xintian Zhu, Chen Liu, Lingfeng Mao, Chuyu Ye, Qianhao Zhu, Longjiang Fan. 2017. PlantcircBase: a database for plant circular RNAs. Molecular Plant [Full text]



Search

Search

Search circRNAs in PlantcircBase.

View list

Browse

Browse all circRNAs in PlantcircBase.

Visualize

Visualize

Visualize structure of circRNAs.

BLASTcirc

Predict

Predict circRNAs from query sequences.

Download

Download

Download entries from PlantcircBase.

Help

Help

Manual of PlantcircBase.


Copyright©2017 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Last modified at 2017-12-22. Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn