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circRNA ID
AT1G01320_circ_g.6
Alias
ath_circ_000040, At_ciR667
Organism
Arabidpsis thaliana
Position
chr1: 123579-123897  JBrowse»
Reference genome
TAIR10.38
Type  
e-circRNA
Identification method
PcircRNA_finder, find_circ, circseq_cup, CIRI-full
Parent gene
Parent gene annotation
Tetratricopeptide repeat (TPR)-like superfamily protein
Parent gene strand
-
Splice junction sequence  
TGCTGGCTATAGACGCGTCTGGCTTAGGAGTACCATTTCGCGCAGCTTCTTGTTGTTCAAAAGC
CTTGGACTCAAAGTATTCTAGCCAAGCAGCAGCATCcttcagaatatagttcttcctctttgct
gccacgctctctttgccttttgcgttatgacttgggttgatatagtcgagtagatcggaaacac
tgcaaaac
Support reads
16/9
Tissues
leaf/aerial
Exon boundary  
Yes-Yes
Splicing signals  
CT-AC
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
CTTCAGAATATAGTTCTTCCTCTTTGCTGCCACGCTCTCTTTGCCTTTTGCGTTATGACTTGGG
TTGATATAGTCGAGTAGATCGGAAACACTTAGGTGGCCTTTGCTGGCTATAGACGCGTCTGGCT
TAGGAGTACCATTTCGCGCAGCTTCTTGTTGTTCAAAAGCCTTGGACTCAAAGTATTCTAGCCA
AGCAGCAGCATCCTTCAGAATATAGTTCTTCCTCTTTGCTGCCACGCTCTCTTTGCCTTTTGCG
TTATGACTTGGGTTGATATAGTCGAGTAGATCGGAAACACTTAGGTGGCCTTTGCTGGCTATAG
ACGCGTCTGGCTTAGGAGTACCATTTCGCGCAGCTTCTTGTTGTTCAAAAGCCTTGGACTCAAA
GTATTCTAGCCAAGCAGCAGCATC
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
CTTCAGAATATAGTTCTTCCTCTTTGCTGCCACGCTCTCTTTGCCTTTTGCGTTATGACTTGGG
TTGATATAGTCGAGTAGATCGGAAACACTGCAAAACATTATCAACTTAAGGATCTGGCCAAGGA
GTACACTTAATTGACACATTCAAACAAAATAAAAAACTTATAAACAACAAATAAGGAGATATCA
GAAAGTTGTTTGACCTTAGGTGGCCTTTGCTGGCTATAGACGCGTCTGGCTTAGGAGTACCATT
TCGCGCAGCTTCTTGTTGTTCAAAAGCCTTGGACTCAAAGTATTCTAGCCAAGCAGCAGCATC
Number of exons covered
AT1G01320.2:2
AT1G01320.1:2
AT1G01320.3:2
Conserved circRNAs
NA
Coding potential
N
Potential coding position
NA
Potential amino acid sequence
NA
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Ye et al., 2015;Chu et al., 2017

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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