 Bioinplant Lab |
The Bioinplant lab is a part of Institute of Crop Sciences, Institute of Bioinformatics, IBM Biocomputing Laboratory and Research Center for Air Pollution and Health, Zhejiang University. Our purpose is to further knowledge of genes and genomes for crop breeding and complex traits/diseases, particularly through approaches of bioinformatics, genomics and genetics. Our current research interests focus on (1) genomes of crops and their relatives; (2) approaches to bridge the gap between genomics and crop improvement, such as genomic big data-based breeding techniques; (3) non-coding RNA basis for a complex trait/disease and bioinformatic methods for identification of epigenetic elements; (4) omic data-based approaches for evaluation of crop safety; (5) development of bioinformatic tools for precision medicine.[PPT1] [PPT2] |
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最新消息（News） |
| Ø 博士生沈一飞第十九届国际植物学大会做专题报告 （2017-8-11） |
| Ø 隆平高科高管来访讨论作物育种与生物信息学领域合作 （2017-8-10） |
| Ø 陈曦讲师参加“农业健康与环境”组学大数据整合生物信息学研讨会并做大会报告 （2017-8-10） |
| Ø Michael Timko教授来访进行学术合作和交流 （2017-8-3） |
| Ø 日本京都大学Iwakami博士来访进行学术交流 （2017-8-2） |
| Ø 实验室组团赴深圳参加第十九届国际植物学大会（IBC2017） （2017-8-1） |
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| 教学材料 （Courses） |
| Ø 《生物信息学札记（第 3 版）》 |
| Ø Classical Articles in Bioinformatics and Genomics |
| Ø History of Bioinformatics |
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| 数据库与生物信息学工具 （Databases and Tools） |
| PlantcircBase |
| PcircRNA-finder |
| eTM_finder |
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近期发表论文 （Recent Publications） |
Comparative whole-genome analysis reveals artificial selection effects on Ustilago esculenta genome. Zihong Ye, Yao Pan, Yafen Zhang, Haifeng Cui, Gulei Jin, Alice C. McHardy, Longjiang Fan*, and Xiaoping Yu*. DNA Research, 2017. doi: 10.1093/dnares/dsx031 [PDF] |
Genomic variation associated with local adaptation of weedy rice during de-domestication. Jie Qiu, Yongjun Zhou, Lingfeng Mao, Chuyu Ye, Weidi Wang, Jianping Zhang, Yongyi Yu, Fei Fu, Yunfei Wang, Feijian Qian, Ting Qi, Sanling Wu, Most. Sultana, Ya-Nan Cao, Yu Wang, Michael Timko, Song Ge, Longjiang Fan*, and Yongliang Lu*. Nature Communications, 2017. doi: 10.1038/ncomms15323 [PDF] [News] |
Analysis of transcriptional and epigenetic changes in hybrid vigor of allopolyploid Brassica napus uncovers key roles for small RNAs. Shen, Yifei; Sun, Shuo; Hua, Shuijin; Shen, Enhui; Ye, Chuyu; Cai, Daguang; Timko, Michael; Zhu, Qian-Hao; Fan, Longjiang*. The Plant Journal, 2017. doi: 10.1111/tpj.13605 [PDF] |
PlantcircBase: a database for plant circular RNAs. Qinjie Chu, Xingchen Zhang, Xintian Zhu, Chen Liu, Lingfeng Mao, Chuyu Ye, Qian-Hao Zhu, Longjiang Fan*. Molecular Plant, 2017. doi: http://dx.doi.org/10.1016/j.molp.2017.03.003 [PDF] |
Accumulation of high OPDA level correlates with reduced ROS and elevated GSH benefiting white cell survival in variegated leaves. Ying-Hsuan Sun, Chiu-Yueh Hung, Jie Qiu, Jianjun Chen, Farooqahmed S. Kittur, Carla E. Oldham, Richard J. Henny, Kent O. Burkey, Longjiang Fan & Jiahua Xie. Scientific Reports, 2017. doi: 10.1038/srep44158 [PDF] |
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重要链接 （Links）
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| u Important databases and Bioinformatics Homepages |
{NCBI |
{EMBL |
{JCVI |
| u Crop Genomes |
{Rice |
| u Links at ZJU |
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实验室成员 （Staff） |
| Staff of Bioinplant |
| 实验室照片 （Photos） |
| Pictures |
| Genome and Bioinformatics Cartoons |
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| 联系我们 （Contact Us） |
| Professor Fan （樊龙江）Email: fanlj@zju.edu.cn |
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bioinplant@zju.edu.cn (实验室）Tel: 86-571-88982730 |
Last updated: August 13, 2017, bioinplant@zju.edu.cn