Bioinplant Lab of Zhejiang University
 

本实验室为浙江大学作物科学研究所、生物信息学研究所、IBM生物计算实验室、空气污染与健康研究中心重要组成部分。利用生物信息学和基因组等组学技术优势,我们主要开展(1)作物基因组及大数据育种技术研究;(2)非编码RNA鉴定与分析;(3)健康医疗与作物安全评价研究。具体包括作物及其野生植物基因组解析、基因组为导向的大数据育种技术、非编码RNA生物信息学鉴定方法及其在复杂性状/疾病发生的遗传机制、基于组学数据的烟草制品等安全评价、精准医疗的生物信息学相关方法等研究。

The Bioinplant lab is a part of Institute of Crop Sciences, Institute of Bioinformatics, IBM Biocomputing Laboratory and Research Center for Air Pollution and Health, Zhejiang University. Our purpose is to further knowledge of genes and genomes for crop breeding and complex traits/diseases, particularly through approaches of bioinformatics, genomics and genetics. Our current research interests focus on (1) genomes of crops and their relatives; (2) approaches to bridge the gap between genomics and crop improvement, such as genomic big data-based breeding techniques; (3) non-coding RNA basis for a complex trait/disease and bioinformatic methods for identification of epigenetic elements; (4) omic data-based approaches for evaluation of crop safety; (5) development of bioinformatic tools for precision medicine.


最新消息News

Ø 樊龙江教授赴英参加国际杂草基因组协作组(IWGC)领导人会议(2017-3-31)
Ø 农学院樊龙江教授团队植物环化RNA(circRNA)研究取得进展(2017-3-19)
Ø 樊龙江教授、邱杰博士访问隆平高科(2017-3-7)
Ø 樊龙江实验室获得国家留学基金委和农业部中德合作科研项目(2017-1-22)
Ø 欢迎陈曦博士加盟!我们的团队不断壮大!(2017-1-20)
Ø 樊龙江实验室两项科研成果列入 “2015年中国植物科学若干领域重要研究进展”(2017-1-14)
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教学材料 (Courses) 
Ø 生物信息学札记(第 3 版)
Ø     Classical Articles in Bioinformatics and Genomics
Ø        History of Bioinformatics
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数据库与生物信息学工具Databases and Tools)
PlantcircBase
PcircRNA-finder
eTM_finder
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近期发表论文Recent Publications)

Analysis of transcriptional and epigenetic changes in hybrid vigor of allopolyploid Brassica napus uncovers key roles for small RNAs. Shen, Yifei; Sun, Shuo; Hua, Shuijin; Shen, Enhui; Ye, Chuyu; Cai, Daguang; Timko, Michael; Zhu, Qian-Hao; Fan, Longjiang*. The Plant Journal, 2017. In press.

Genomic variation associated with local adaptation of weedy rice during de-domestication. Jie Qiu, Yongjun Zhou, Lingfeng Mao, Chuyu Ye, Weidi Wang, Jianping Zhang, Yongyi Yu, Fei Fu, Yunfei Wang, Feijian Qian, Ting Qi, Sanling Wu, Most. Sultana, Ya-Nan Cao, Yu Wang, Michael Timko, Song Ge, Longjiang Fan*, and Yongliang Lu*. Nature Communications, 2017. In press.

PlantcircBase: a database for plant circular RNAs. Qinjie Chu, Xingchen Zhang, Xintian Zhu, Chen Liu, Lingfeng Mao, Chuyu Ye, Qian-Hao Zhu, Longjiang Fan*. Molecular Plant, 2017. doi: http://dx.doi.org/10.1016/j.molp.2017.03.003 [PDF]

Accumulation of high OPDA level correlates with reduced ROS and elevated GSH benefiting white cell survival in variegated leaves. Ying-Hsuan Sun, Chiu-Yueh Hung, Jie Qiu, Jianjun Chen, Farooqahmed S. Kittur, Carla E. Oldham, Richard J. Henny, Kent O. Burkey, Longjiang Fan & Jiahua Xie. Scientific Reports, 2017. doi: 10.1038/srep44158 [PDF]

Full length sequence assembly reveals circular RNAs with diverse non GT AG splicing signals in rice. Chu-Yu Ye*, Xingchen Zhang, Qinjie Chu, Chen Liu, Yongyi Yu, Weiqin Jiang, Qian-Hao Zhu, Longjiang Fan, Longbiao Guo*. RNA Biology, 2016. doi: 10.1080/15476286.2016.1245268 [PDF]

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重要链接Links)

u     Important databases and Bioinformatics Homepages

{NCBI

{EMBL

{Expasy

{JCVI

{CBI-PU

u     Crop Genomes

{Rice

{Oilseed rape

{Tobacco

{Paddy weeds

u     Links at ZJU

{农学系/作物科学研究所

{生物信息学研究所

{沃森基因组研究院

{中美作物分子育种联合实验室


实验室成员Staff)

Staff of Bioinplant
实验室照片Photos)
Pictures
Genome and Bioinformatics Cartoons

联系我们Contact Us
Professor Fan 樊龙江Email: fanlj@zju.edu.cn

bioinplant@zju.edu.cn  (实验室)Tel86-571-88982730


Last updated: May 17, 2017, bioinplant@zju.edu.cn