Bioinplant Lab of Zhejiang University
 

本实验室为浙江大学作物科学研究所、生物信息学研究所、IBM生物计算实验室、中美植物与医学健康联合研究中心重要组成部分。利用生物信息学和基因组等组学技术优势,我们主要开展(1)植物基因组及大数据育种技术;(2)组学大数据分析方法、数据库与工具;(3)转化医学与健康。具体包括作物及其相关植物基因组解析、基因组数据为导向的大数据育种技术、单细胞组学数据生物信息学分析方法与工具、健康与医学相关内容(如跨界调控、单细胞组学技术应用)等。[简介] [全家福][公众号]

The Bioinplant lab is a part of Institute of Crop Sciences, Institute of Bioinformatics, IBM Biocomputing Laboratory and Sino-US Plant and Health Medicine Joint Reasearch Center, Zhejiang University. Our purpose is to further knowledge of genomes for crop breeding and complex traits/diseases, particularly through approaches of bioinformatics and omics. Our current research interests focus on (1) genomes of crops and their relatives and approaches to bridge the gap between genomics and crop improvement, such as genome-based breeding techniques; (2) Algorithms, databases, bioinformatic tools for omic data from single-cells, 3D genomes, etc.; (3) plant comparative medicine and health, such as comparative studies on diseases (tumors, scar, etc) in both plant and human, cross-talk of plant genetic elements (miRNA) in human, omic data-based approaches for safety evaluation of agricultural products.


最新消息(News)
Ø 褚琴洁研究员入职浙江大学,加入本实验室(2022-04-23)
Ø 本实验室受邀为《Mol Plant》水稻基因组学研究20年专辑撰文(2022-04-10)【华大CEO视频】
Ø Plant Com | 浙江大学樊龙江团队报道首个植物基因簇横向转移事件(2022-03-30)
Ø 樊龙江教授荣获Crop Journal期刊2021年度优秀编委(2022-03-10)
Ø 本实验室建成国内首个电子雾化制品生物学安全评估平台(2022-03-03)【全球电子烟行业热点新闻】
Ø Nature Commun | 浙江大学樊龙江团队揭示稗属作物与稗草的“爱恨情仇”(2022-02-04) 【NC's Featured article】
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教学材料(Courses)
Ø 《生物信息学》(第二版),樊龙江主编,2021;     致敬经典:《生物信息学》(第二版)出版!     [后记——纪念郝柏林院士]   [视频简介]
Ø 《植物基因组学》,樊龙江主编,2020; 图片下载 ;    重磅!《植物基因组学》出版;[韩斌院士序] ;[后记] ;[植物基因组测序20周年回顾与展望]   [视频简介]
Ø 《生物信息学札记》(樊龙江,2001,2005,2010)
Ø 本实验室公众号:生信大讲堂
Ø 韩斌院士谈作物学学科发展方向与农学专业
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数据库与生物信息学工具 (Databases and Tools)
PlantscRNAdb: A database for plant single-cell RNA analysis
RiceRelativesGD: A database of rice relatives for rice research
PlantcircBase: A database for plant circular RNAs
PcircRNA-finder: A program to identify circular RNAs in plants
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近期发表论文 (Recent Publications)

Horizontal transfer and evolution of the biosynthetic gene cluster for benzoxazinoid in plants. Dongya Wu, Bowen Jiang, Chuyu Ye, Michael P.Timko, Longjiang Fan*. Plant Communications, 2022.doi:https://doi.org/10.1016/j.xplc.2022.100320

Horizontal transfers lead to the birth of momilactone biosynthetic gene clusters in grass. Dongya Wu, Yiyu Hu, Shota Akashi, Hideaki Nojiri, Chuyu Ye, QianHao Zhu, Kazunori Okada, Longjiang Fan*. bioRxiv, 2022.doi:https://doi.org/10.1101/2022.01.11.475971

Genomic insights into the evolution of Echinochloa species as weed and orphan crop. Dongya Wu, Enhui Shen, Bowen Jiang, Yu Feng, Wei Tang, Sangting Lao, Lei Jia, HanYang Lin, Lingjuan Xie, Xifang Weng, Chenfeng Dong, Qinghong Qian, Feng Lin, Haiming Xu, Huabing Lu, Luan Cutti, Huajun Chen, Shuiguang Deng, Longbiao Guo, TseSeng Chuah, BengKah Song, Laura Scarabel, Jie Qiu, QianHao Zhu, Qin Yu, Michael Timko, Hirofumi Yamaguchi, Aldo Merotto Jr, Yingxiong Qiu, Kenneth Olsen, Longjiang Fan, and Chuyu Ye*. Nature Communications, 2022. doi:https://www.nature.com/articles/s41467-022-28359-9 [NC's Featured article]

Weedy rice, a hidden gold mine in the paddy field. Dongya Wu, Jie Qiu, Jian Sun, Beng Kah Song, Kenneth M. Olsen, Longjiang Fan*. Molecular Plant, 2022. doi:https://doi.org/10.1016/j.molp.2022.01.008

植物基因组测序研究进展. 谢玲娟, 叶楚玉, 沈恩惠*. 植物科学学报, 2021. doi:http://www.plantscience.cn/CN/10.11913/PSJ.2095-0837.2021.60681

Population genomic analysis reveals domestication of cultivated rye from weedy rye. Yanqing Sun, Enhui Shen, Yiyu Hu, Dongya Wu, Yu Feng, Sangting Lao, Chenfeng Dong, Tianyu Du, Wei Hua, Chuyu Ye, Jinhuan Zhu, Qian-Hao Zhu, Daguang Cai, Lidia Skuza, Jie Qiu, Longjiang Fan*. Molecular Plant, 2021. doi:https://doi.org/10.1016/j.molp.2021.12.015 [MP Spotlight]

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重要链接 (Links)

Important Databases and Bioinformatics Portals
NCBI
EMBL
ExPASy
JCVI
CBI-PU
Crop and Relatives Genomes
✽ Rice [MSU][RAP-DB][RIGW][RiceRelativesGD][PlantcircBase]
✽ Red rice / weedy rice [RiceRelativesGD]
✽ Barnyard millet / barnyardgrass (Echinochloa) [RiceRelativesGD]
✽ Oilseed rape [BnPedigome][BRAD][GENOSCOPE]
✽ Gu/Jiaobai (Zizania) [RiceRelativesGD]
✽ Tobacco [Sol Genomics]
✽ Bryophyte (Calohypnum, formely Hypnum ) [BIGD] [RiceRelativesGD]
Links at ZJU
✽ 中美植物与健康医学联合研究中心 (Sino-US Plant and Health Medicine Joint Reasearch Center)
✽ 作物科学研究所 (Institute of Crop Science)
✽ 生物信息学研究所 (Institute of Bioinformatics)
✽ IBM生物计算实验室 (IBM Biocomputational Laboratory)
✽ 中美作物分子育种联合实验室 (Sino-US Crop Molecular Breeding Joint Laboratory)
✽ 沃森基因组研究院 (James D. Watson Institute of Genome Sciences)

实验室成员 (Staff)
Staff of Bioinplant
实验室照片 (Photos)
Pictures
Genome and Bioinformatics Cartoons

实验室视频与海报 (Video & Poster)
Video
Poster

联系我们Contact Us
Professor Fan 樊龙江 Email: fanlj@zju.edu.cn
bioinplant@zju.edu.cn (实验室Tel:  86-571-88982730

Last updated: June, 2021, bioinplant@zju.edu.cn