![]() |
The Bioinplant lab is a part of Institute of Crop Sciences, Institute of Bioinformatics, IBM Biocomputing Laboratory and Sino-US Plant and Health Medicine Joint Reasearch Center, Zhejiang University. Our purpose is to further knowledge of genomes for crop breeding and complex traits/diseases, particularly through approaches of bioinformatics and omics. Our current research interests focus on (1) genomes of crops and their relatives and approaches to bridge the gap between genomics and crop improvement, such as genome-based breeding techniques; (2) Algorithms, databases, bioinformatic tools for omic data from single-cells, 3D genomes, etc.; (3) plant comparative medicine and health, such as comparative studies on diseases (tumors, scar, etc) in both plant and human, cross-talk of plant genetic elements (miRNA) in human, omic data-based approaches for safety evaluation of agricultural products. |
|
最新消息(News) |
Ø 本实验室合作发表杂草基因组及其育种利用研究进展(2023-01-11) |
Ø 喜讯!本实验室学生获2021-2022学年国家奖学金等多项奖项(2022-10-19) |
Ø 褚琴洁研究员在CSPB全国学术年会作专题报告(2022-10-17) |
Ø 吴东亚博士荣获先正达奇尔顿研究生奖学金(2022-10-13) |
Ø Mol Plant │ 观点——无意识选择使驯化瓶颈效应复杂化(2022-08-17) |
Ø 褚琴洁研究员第二届植物单细胞生物学国际研讨会大会报告(2022-08-15) |
>> more |
|
![]() ![]() ![]() |
教学材料(Courses) |
Ø 《生物信息学》(第二版),樊龙江主编,2021; 致敬经典:《生物信息学》(第二版)出版! [后记——纪念郝柏林院士] [视频简介] |
Ø 《植物基因组学》,樊龙江主编,2020; 图片下载 ; 重磅!《植物基因组学》出版;[韩斌院士序] ;[后记] ;[植物基因组测序20周年回顾与展望] [视频简介] |
Ø 《生物信息学札记》(樊龙江,2001,2005,2010) |
Ø 本实验室公众号:生信大讲堂 |
Ø 韩斌院士谈作物学学科发展方向与农学专业 |
>> more |
|
数据库与生物信息学工具 (Databases and Tools) |
PlantscRNAdb: A database for plant single-cell RNA analysis |
RiceRelativesGD: A database of rice relatives for rice research |
PlantcircBase: A database for plant circular RNAs |
PcircRNA-finder: A program to identify circular RNAs in plants |
>> more |
|
近期发表论文 (Recent Publications) |
Weed genomics: Yielding insights into the genetics of weedy traits for crop improvement. Yujie Huang, Dongya Wu, Zhaofeng Huang, Xiangyu Li, Aldo Merotto Jr, Lianyang Bai*, Longjiang Fan*. aBIOTECH , 2022.doi: https://doi.org/10.1007/s42994-022-00090-5 |
Poaceae chloroplast genome sequencing: great leap forward in recent ten years. Yiyu Hu, Yanqing Sun, Qianhao Zhu, Longjiang Fan, Jianhua Li*. Current Genomics , 2022. doi: https://doi.org/10.2174/1389202924666221201140603 |
A Manually curated database and analysis platform of cell markers of scars. Yan Zheng, Jie Yao, Xiner Shen, Haijun Cheng, Yinbo Peng, Weiqiang Tan, Michael P. Timko, Longjiang Fan*. Journal of Investigative Dermatology , 2022. doi: https://www.sciencedirect.com/science/article/abs/pii/S0022202X2202663X |
Identification of plant-derived microRNAs in human kidney. Xi Chen, Xishao Xie, Lu Liu, Hongyu Chen, Bo Wang, Zheng Li, Linghui Zeng, Micheal Timko, Jianhua Chen*, Weiqiang Lin*, Longjiang Fan* bioRxiv , 2022. doi: https://doi.org/10.1101/2022.10.25.513797 |
Single-cell transcriptome of Nepeta tenuifolia leaves reveal differentiation trajectories in glandular trichomes. Peina Zhou, Hongyu Chen, Jingjie Dang, Zunrui Shi, Yongfang Shao, Chanchan Liu, Longjiang Fan*, Qinan Wu*. Frontiers in Plant Science, 2022. doi:https://doi.org/10.3389/fpls.2022.988594 |
EMLI-ICC: An ensemble machine learning-based integration algorithm for metastasis prediction and risk-stratification in intrahepatic cholangiocarcinoma. Jian Ruan, Shuaishuai Xu, Ruyin Chen, Qiong Li, Chanqi Ye, Wei Wu, Qi Jiang, Feifei Yan, ..., Michael P. Timko, Peng Zhao*, Longjiang Fan*, Yifei Shen*. Briefings in Bioinformatics, 2022. doi:https://doi.org/10.1093/bib/bbac450 |
>> more |
|
重要链接 (Links) |
Important Databases and Bioinformatics Portals |
✽ NCBI |
✽ EMBL |
✽ ExPASy |
✽ JCVI |
✽ CBI-PU |
Crop and Relatives Genomes |
✽ Rice [MSU][RAP-DB][RIGW][RiceRelativesGD][PlantcircBase] |
✽ Red rice / weedy rice [RiceRelativesGD] |
✽ Barnyard millet / barnyardgrass (Echinochloa) [RiceRelativesGD] |
✽ Oilseed rape [BnPedigome][BRAD][GENOSCOPE] |
✽ Gu/Jiaobai (Zizania) [RiceRelativesGD] |
✽ Tobacco [Sol Genomics] |
✽ Bryophyte (Calohypnum, formely Hypnum ) [BIGD] [RiceRelativesGD] |
Links at ZJU |
✽ 中美植物与健康医学联合研究中心 (Sino-US Plant and Health Medicine Joint Reasearch Center) |
✽ 作物科学研究所 (Institute of Crop Science) |
✽ 生物信息学研究所 (Institute of Bioinformatics) |
✽ IBM生物计算实验室 (IBM Biocomputational Laboratory) |
✽ 中美作物分子育种联合实验室 (Sino-US Crop Molecular Breeding Joint Laboratory) |
✽ 沃森基因组研究院 (James D. Watson Institute of Genome Sciences) |
|
实验室成员 (Staff) |
Staff of Bioinplant |
实验室照片 (Photos) |
Pictures |
Genome and Bioinformatics Cartoons |
|
实验室视频与海报 (Video & Poster) |
Video |
Poster |
|
联系我们 (Contact Us) |
Professor Fan (樊龙江) Email: fanlj@zju.edu.cn |
bioinplant@zju.edu.cn (实验室)Tel: 86-571-88982730 |
Last updated: June, 2021, bioinplant@zju.edu.cn