 Bioinplant Lab |
The Bioinplant lab is a part of Institute of Crop Sciences, Institute of Bioinformatics, IBM Biocomputing Laboratory and Research Center for Air Pollution and Health, Zhejiang University. Our purpose is to further knowledge of genes and genomes for crop breeding and complex traits/diseases, particularly through approaches of bioinformatics, genomics and genetics. Our current research interests focus on (1) genomes of crops and their relatives; (2) approaches to bridge the gap between genomics and crop improvement, such as genomic big data-based breeding techniques; (3) non-coding RNA basis for a complex trait and bioinformatic methods for identification of epigenetic elements; (4) omic data-based approaches/bioinformatic tools for evaluation of crop safety and health. [Poster] [Family] |
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| 最新消息（News） |
| Ø 我实验室作物拟态研究论文获F1000最高星级推荐（2019-10-16） |
| Ø 樊龙江教授应邀在中科院遗传发育所和南京农大报告作物拟态研究进展（2019-10-14） |
| Ø 樊龙江教授团队赴德国参加CORESTA烟气科学与产品技术研究组联席会议（2019-10-14） |
| Ø 樊龙江教授带队赴云南调查稻田杂草及栽培稗草（2019-09-30） |
| Ø 祝贺！樊龙江教授团队Nature Ecology & Evolution发表论文揭示作物拟态遗传机制!（2019-09-17）【国内外新闻报道】【BEHIND THE PAPER】【《影响世界的中国植物》纪录片《水稻》一集】【F1000Prime推荐】 |
| Ø 我实验室参与拍摄大型记录片《影响世界的中国植物》第二集《水稻》，讲述水稻与杂草的竞争故事（2019-09-14） |
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| 教学材料（Courses） |
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《生物信息学札记（第4版）》；《生物信息学》，樊龙江主编，2017；[郝柏林院士序言]；[亚马逊在线购买]
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| Ø 大型记录片《影响世界的中国植物》第二集《水稻》 [新闻链接] |
| Ø 实验室公众号生信入门好文推荐 |
| Ø 友情链接：基因课（张旭东） |
| Ø 经典论文翻译 |
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| 数据库与生物信息学工具 （Databases and Tools） |
| RiceRelativesGD: a database of rice relatives for rice breeding |
| PlantcircBase：a database for plant circular RNAs |
| BnPedigome: a genomic database for the pedigrees and breeding of Brassica napus |
| PcircRNA-finder：a program to identify circular RNAs in plants |
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| 近期发表论文 （Recent Publications） |
AKR, a novel mechanism involved in glyphosate metabolism and resistance in Echinochloa colona. Pan Lang, Qin Yu*, Heping Han, Lingfeng Mao, Alex Nyporko, Longjiang Fan*, Lianyang Bai*, and Stephen Powles. Plant Physiology, 2019. doi:https://doi.org/10.1104/pp.19.00979 [PDF] |
Genomic evidence of human selection on Vavilovian mimicry. Ye Chu-Yu, Wei Tang, Dongya Wu, Lei Jia, Jie Qiu, Meihong Chen, Lingfeng Mao, Feng Lin, Haiming Xu, Xiaoyue Yu, Yongliang Lu, Yonghong Wang, Kenneth M Olsen, Michael P. Timko, Longjiang Fan*. Nature Ecology & Evolution, 2019. doi: https://doi.org/10.1038/s41559-019-0976-1 [PDF] [Behind The Paper]] [Newswise Report] [F1000Prime] |
RiceRelativesGD: a genomic database of rice relatives for rice research. Mao Lingfeng, Chen Meihong, Chu Qinjie, Jia Lei, Most. Humaira Sultana, Wu Dongya, Kong X, Qiu Jie, Ye Chu-Yu, Chen Xi*, and Fan Longjiang. Database, 2019. doi:https://doi.org/10.1093/database/baz110 [PDF] |
Characterization and evolution of gene clusters for terpenoid phytoalexin biosynthesis in tobacco. Chen Xi, Fangjie Liu, Lu Liu, Jie Qiu, Dunhuang Fang, Weidi Wang, Xingcheng Zhang, Chuyu Ye, Michael Paul Timko, Qian-Hao Zhu, Longjiang Fan, Bingguang Xiao*. Planta, 2019. doi: https://doi.org/10.1007/s00425-019-03255-7 [PDF] |
Gene modules co-regulated with biosynthetic gene clusters for allelopathy between rice and barnyardgrass. Sultana Most. Humaira, Fangjie Liu, Md. Alamin, Lingfeng Mao, Lei Jia, Hongyu Chen, Dongya Wu, Yingying Wang, Fei Fu, Sanling Wu, Weidi Wang, Chuyu Ye, Qian-hao Zhu, Jie Qiu *, Longjiang Fan. International Journal of Molecular Sciences, 2019. doi: https://www.mdpi.com/1422-0067/20/16/3846 [PDF] |
Elimination of a retrotransposon for quenching genome instability in modern rice. Yu Peng#, Yingying Zhang#, Yijie Gui, Dong An, Junzhong Liu, Xun Xu, Qun Li, Junmin Wang, Wen Wang, Chunhai Shi, Longjiang Fan, Baorong Lu, Yiwen Deng*, Sheng Teng*, Zuhua He*. Molecular Plant, 2019. doi: https://doi.org/10.1016/j.molp.2019.06.004 [PDF] |
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重要链接 （Links） |
| Important Databases and Bioinformatics Portals |
| ✽ NCBI |
| ✽ EMBL |
| ✽ Expasy |
| ✽ JCVI |
| ✽ CBI-PU |
| Crop and Relatives Genomes |
| ✽ Rice [MSU][RAP-DB][RIGW][RiceRelativesGD][PlantcircBase] |
| ✽ Weedy rice [RiceRelativesGD] |
| ✽ Barnyardgrass (Echinochloa) [RiceRelativesGD] |
| ✽ Oilseed rape [BnPedigome][BRAD][GENOSCOPE] |
| ✽ Gu/Jiaobai (Zizania) [RiceRelativesGD] |
| ✽ Tobacco [Sol Genomics] |
| Links at ZJU |
| ✽ 中美植物与健康医学联合研究中心 (Sino-US Plant and Health Medicine Joint Reasearch Center) |
| ✽ 作物科学研究所 (Institute of Crop Science) |
| ✽ 生物信息学研究所 (Institute of Bioinformatics) |
| ✽ IBM生物计算实验室 (IBM Biocomputational Laboratory) |
| ✽ 中美作物分子育种联合实验室 (Sino-US Crop Molecular Breeding Joint Laboratory) |
| ✽ 沃森基因组研究院 (James D. Watson Institute of Genome Sciences) |
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| 实验室成员 （Staff） |
| Staff of Bioinplant |
| 实验室照片 （Photos） |
| Pictures |
| Genome and Bioinformatics Cartoons |
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| 联系我们 （Contact Us） |
| Professor Fan （樊龙江） Email: fanlj@zju.edu.cn |
| bioinplant@zju.edu.cn (实验室）Tel: 86-571-88982730 |
Last updated: August, 2019, bioinplant@zju.edu.cn