 Bioinplant Lab |
The Bioinplant lab is a part of Institute of Crop Sciences, Institute of Bioinformatics, IBM Biocomputing Laboratory and Research Center for Air Pollution and Health, Zhejiang University. Our purpose is to further knowledge of genes and genomes for crop breeding and complex traits/diseases, particularly through approaches of bioinformatics, genomics and genetics. Our current research interests focus on (1) genomes of crops and their relatives; (2) approaches to bridge the gap between genomics and crop improvement, such as genomic big data-based breeding techniques; (3) non-coding RNA basis for a complex trait and bioinformatic methods for identification of epigenetic elements; (4) omic data-based approaches/bioinformatic tools for evaluation of crop safety and health.[PPT1] [PPT2] |
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最新消息（News） |
| Ø 全球知名统计软件公司SAS创始人John Sall博士来访 （2018-4-15） |
| Ø 沈恩惠博士赴武汉参加国际油菜基因组研讨会 （2018-3-29） |
| Ø 郝柏林院士在浙大的那三年——我眼中的郝先生 （2018-3-9） |
| Ø 忆往昔峥嵘岁月稠 看今朝旖旎风光秀 ——实验室年会侧记 （2018-2-6） |
| Ø 樊龙江教授赴美国参加动植物基因组大会（PAG） （2018-1-22） |
| Ø 樊龙江教授主编《生物信息学》入选浙江大学出版社2017年度好书 （2018-1-19） |
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| 教学材料 （Courses） |
Ø 《生物信息学札记（第4版）》【《生物信息学》，樊龙江主编，2017】【郝柏林院士序言】 [生信大讲堂留言][【亚马逊在线购买】BIOINFORMATICS book (in Chinese by Prof. Fan) at Amazon ]  |
| Ø 经典论文翻译 |
| Ø Classical Articles in Bioinformatics and Genomics |
| Ø History of Bioinformatics |
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| 数据库与生物信息学工具 （Databases and Tools） |
| PlantcircBase：a database for plant circular RNAs |
| PcircRNA-finder：a program to identify circular RNAs in plants |
| eTM_finder：a tool to predict eTMs (endogenous target mimics) of miRNAs in plants |
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近期发表论文 （Recent Publications） |
The Circular RNA Profiles of Colorectal Tumor Metastatic Cells . Weiqin Jiang, Xingchen Zhang, Qinjie Chu, Sen Lu, Linfu Zhou, Xingang Lu, Chen Liu, Lingfeng Mao, Chuyu Ye, Michael P. Timko, Longjiang Fan* and Haixing Ju*. Frontiers in Genetics, 2018. doi: 10.3389/fgene.2018.00034 [PDF] |
Emerging Roles of Plant Circular RNAs. Qinjie Chu, Enhui Shen, Chu-Yu Ye, Longjiang Fan, Qian-Hao Zhu*. Journal of Plant Cell, 2018. doi: coming soon [PDF] |
Echinochloa crus-galli genome analysis provides insight into its adaptation and invasiveness as a weed. Guo Longbiao#, Jie Qiu#, Chuyu Ye, Gulei Jin, Lingfeng Mao,Haiqiang Zhang, Xuefang Yang, Qiong Peng, Yingying Wang, Lei Jia, Zhangxiang Lin, Gengmi Li, Fei Fu, Chen Liu, Li Chen, Enhui Shen, Weidi Wang, Sanling Wu, Chenyang Xia, Yongfei Zhang,Xiaomao Zhou, Lifeng Wang, Lamei Wu, Weijie Song, Yunfei Wang, Qingyao Shu, Daisuke Aoki, Emi Yumoto, Takao Yokota, Koji Miyamoto, Kazunori Okada, Do-Soon Kim, Daguang Cai, Chulong Zhang, Yonggen Lou, Qian Qian, Hirofumi Yamaguchi, Hisakazu Yamane, Chui-Hua Kong, Michael P. Timko, Lianyang Bai*, Longjiang Fan*. Nature Communications, 2017. doi: 10.1038/s41467-017-01067-5 [PDF][Media Coverage][F1000 Recommended] |
A naive Bayes algorithm for tissue origin diagnosis (TOD-Bayes) of synchronous multifocal tumors in the hepatobiliary and pancreatic system. Weiqin Jiang, Yifei Shen, Yongfeng Ding, Chuyu Ye, Yi Zheng, Peng Zhao,Lulu Liu, Zhou Tong,Linfu Zhou, Shuo Sun, Xingchen Zhang, Lisong Teng, Michael P. Timko, Longjiang Fan*, Weijia Fang*. International Journal of Cancer, 2017. doi: 10.1002/ijc.31054 [PDF][Cover story] |
Comparative whole-genome analysis reveals artificial selection effects on Ustilago esculenta genome. Zihong Ye, Yao Pan, Yafen Zhang, Haifeng Cui, Gulei Jin, Alice C. McHardy, Longjiang Fan*, and Xiaoping Yu*. DNA Research, 2017. doi: 10.1093/dnares/dsx031 [PDF] |
Genomic variation associated with local adaptation of weedy rice during de-domestication. Jie Qiu, Yongjun Zhou, Lingfeng Mao, Chuyu Ye, Weidi Wang, Jianping Zhang, Yongyi Yu, Fei Fu, Yunfei Wang, Feijian Qian, Ting Qi, Sanling Wu, Most. Sultana, Ya-Nan Cao, Yu Wang, Michael Timko, Song Ge, Longjiang Fan*, and Yongliang Lu*. Nature Communications, 2017. doi: 10.1038/ncomms15323 [PDF] [Media Coverage] |
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重要链接 （Links）
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| Important Databases and Bioinformatics Portals |
{NCBI |
{EMBL |
{JCVI |
| Crop and Relatives Genomes |
{Weedy rice [Weedomes] |
{Gu/Jiaobai (Zizania) [Link] |
{Tobacco [Sol Genomics] |
| Links at ZJU |
{中美作物分子育种联合实验室(Sino-US Crop Molecular Breeding Joint Laboratory) |
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实验室成员 （Staff） |
| Staff of Bioinplant |
| 实验室照片 （Photos） |
| Pictures |
| Genome and Bioinformatics Cartoons |
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| 联系我们 （Contact Us） |
| Professor Fan （樊龙江）Email: fanlj@zju.edu.cn |
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bioinplant@zju.edu.cn (实验室）Tel: 86-571-88982730 |
Last updated: April; 16, 2018, bioinplant@zju.edu.cn