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circRNA ID
AT1G01320_circ_g.27
Alias
ath_circ_000061, At_ciR3172
Organism
Arabidpsis thaliana
Position
chr1: 128479-130149  JBrowse»
Reference genome
TAIR10.38
Type  
ue-circRNA
Identification method
find_circ, CIRI-full
Parent gene
Parent gene annotation
Tetratricopeptide repeat (TPR)-like superfamily protein
Parent gene strand
-
Splice junction sequence  
TTCTTCTTCTTATCTCCTTTTGTCTTTCCACGGTTGTTCTTGGGAGCCATTTCTTCTAGAGCTT
TTTTTCTTTTCTTTTATTGAAATAAACAAATAATATcttccgttaacgtgagaacacagggttt
aagggccgacacatccactgtgtcttttaaccgcgatcctcttatctgcaaccaatcttgagtc
agaacgtg
Support reads
2
Tissues
leaf
Exon boundary  
Yes-Yes
Splicing signals  
CT-AC
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
CTTCCGTTAACGTGAGAACACAGGGTTTAAGGGCCGACACATCCACTGTGTCTTTTAACCGCGA
TCCTCTTATCTCATTTTTCTTTTGTTAAAATCTCAGGTTATTTACCTCATGGGAGAGCGAATAA
TTGGTGACGTGGCAGGTGTCGAAGTTAACCGATAACAGCCGCCGAACATCTATGATCCTGTCCG
TTGATATGCCCTTTCTCTTCCTTCTTCTTCTTATCTCCTTTTGTCTTTCCACGGTTGTTCTTGG
GAGCCATTTCTTCTAGAGCTTTTTTTCTTTTCTTTTATTGAAATAAACAAATAATAT
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
CTTCCGTTAACGTGAGAACACAGGGTTTAAGGGCCGACACATCCACTGTGTCTTTTAACCGCGA
TCCTCTTATCTGCAACCAATCTTGAGTCAGAACGTGAATTTGATTTAACTATTTTACCACAGTC
AATTTTTTTATACTCTTTATGGGATGATTTTGAATAAGGCAATTCTGGTAAAATATCTGTTATC
TAAAAACAGAAAAGGAAACTCAATTGTCAGACTAGCAAAATTCAATGACACTATATTCTTTTCT
TTATTTCTCAGATGAAAAAGTCATTTTCCTTTACTTTTTTAGCTCACTTTATTTTTAGGATCCT
AAGAAATTCCACAATAAACATGAATATTTCTGGACCATCAAACATTAACAAGTAACCAACAATC
GTGAACCAGAGAAACAAGTAACTAACATGGAACAATTTAGAAACTTCCACTCACTCAGATTATT
TTTACCTCATTTTTCTTTTGTTAAAATCTCAGGTTATTTACCTCATGGGAGAGCGAATAATTGG
TGACGTGGCAGGTGTCGAAGTTAACCGATAACAGCCGCCGAACATCTATGATCCTGTCCGTTGA
TATGCCCTGTTTCAGACATTTTCTCTATAAAATCCACTTTTGATAATTTTATTTTTGGAATAAT
AAACATATGAAACCTATACCTAACATACGGCAAAAAAAAATCATTAATATTATTAATTTCAAAC
AAGAAAACATTTGTAACAAATATTCGAGTAACAAAATACGAATATAGATAAACATGTTTTCTGA
CGACAAAAGATGATACACATGTTTTCCATATAAACATTTCACTGTCTATGTAACGTCTACGTAA
TATTATTGACCAGAATTATGAGAAACTAATGAATTATTTAACAATCGAAAATTTGTGTGTTACA
CACAGTTTTGTATTTTTCTACACGTTCAAATAATGATAAAATTTAAGAAGATAATTCTAAGTCA
AGGAAATGATTTTTTATTTTTTTTCAAAAAATTAATACAACAAGTATAAGTGTAAACCTATCAT
TTTGTAGGTAACGTGTCTTGCCTTATCCCGGAAAAACGACATCATAAAAATAAATCGAGTGCAC
ATTGGGAGTTTATTTATATATATCAGAAATGAATTTAAAAGCACTAGTTCTGATTAAACTAAAT
AAAATCTTTGAATTTTAAAAATATAAAGATAAACTTTCATCAATATGCTATAAGTTCAATACTG
AAACTAATGTTATATAAATTAGTTAATTGCATAAAAGGGATATAACAAAATTCAGAGAAAATAT
CGGTACCAAAAAAAAAACAGTTGTAAACACGCAAGAAATATGAAAATTTTACATAAATTCGAAA
ATGATGCTAGAAAATAAATCACACACAGACCTTCAAAATAGCCTCCGTTTCATCCGGAAGGTTT
ACAATGACATCCACGATAACCGGGAGAACTGCACATAAACCGTAAGGCGTAAACCATCATGATT
CATATAGAGAACTGAGAAATTAATTATTGGTTAAGAAGTAATTTTATTGAAATTCATATTGATT
AAGGTTTTCGTCGTTGGTTGGTACCTTTCTCTTCCTTCTTCTTCTTATCTCCTTTTGTCTTTCC
ACGGTTGTTCTTGGGAGCCATTTCTTCTAGAGCTTTTTTTCTTTTCTTTTATTGAAATAAACAA
ATAATAT
Number of exons covered
AT1G01320.1:4
AT1G01320.2:4
AT1G01320.3:4
Conserved circRNAs
NA
Coding potential
N
Potential coding position
NA
Potential amino acid sequence
NA
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Ye et al., 2015

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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