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circRNA ID
AT1G01320_circ_g.10
Alias
ath_circ_000044
Organism
Arabidpsis thaliana
Position
chr1: 123579-125022  JBrowse»
Reference genome
TAIR10.38
Type  
e-circRNA
Identification method
CIRCexplorer
Parent gene
Parent gene annotation
Tetratricopeptide repeat (TPR)-like superfamily protein
Parent gene strand
-
Splice junction sequence  
TCGTTCCATATGTAACTGCATCTTCAAGCTTTCCTTTGTCTAAAGCTGTTTTAGATGACTCCAG
AAGTTGCCTTCCATCAGCAGATGAACATGCTGCTTGcttcagaatatagttcttcctctttgct
gccacgctctctttgccttttgcgttatgacttgggttgatatagtcgagtagatcggaaacac
tgcaaaac
Support reads
3
Tissues
seedlings
Exon boundary  
Yes-Yes
Splicing signals  
CT-AC
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
CTTCAGAATATAGTTCTTCCTCTTTGCTGCCACGCTCTCTTTGCCTTTTGCGTTATGACTTGGG
TTGATATAGTCGAGTAGATCGGAAACACTGCAAAACATTATCAACTTAAGGATCTGGCCAAGGA
GTACACTTAATTGACACATTCAAACAAAATAAAAAACTTATAAACAACAAATAAGGAGATATCA
GAAAGTTGTTTGACCTTAGGTGGCCTTTGCTGGCTATAGACGCGTCTGGCTTAGGAGTACCATT
TCGCGCAGCTTCTTGTTGTTCAAAAGCCTTGGACTCAAAGTATTCTAGCCAAGCAGCAGCATCC
TGAACCATATAATCAATTGTCAAACTTAAAGAATGCATACAGTTGTCAGAAAGATGACTAATTT
GGCTGATAGGATATCATGATAATATATACCTGAGTACGTAAATCATCTGGCCCCAGCTTTGCTC
GAAGGATTCTTAAGGTTGTTTGCTCATGCTGAACACTTAAATGGTATGCCTCCATCAAGGAGAG
CGCAATTGCTATGGCATGGTAGCTTGCAGCAGTCTGAAATTTGACATAATTAGCAAAATCAAAT
CAAGTTTCTTACATATTTATGTTCCCAAAACAAAAAACGAGCATCGGGAAAAGAACCTGGATAT
GGTCCGGACCAAGCAACCTTTGATTACACTTGAGAGCTTTGTGAAGATACCTCAAGGCAACATG
CACATTTCCTAGACCTTCCTCCATCATGGCTACATTGATGTATGTAGCAGCAGTATTTGGATGA
GATGGACCGCATGTGAGATGTAAGAGATACAACGCACGCTTAACATACCTAACAAAAACAATCA
TATCCAGGTTTAGATGATGGAAAGAGACATCAAACATTTAAACCATCTAACCTCGCGATTCTTT
TAAAATCAAGAGTGCTAAACTTACTTGAGAGCCAGCTCTGTATGCTGAAGCCTATAATAGAAGA
CAGCAAGATCACCATAACTCTTCATTGTATCTGGATGATCAAGTCCAAGTTCCCTCTCATTGAT
GTCTAAAGCCTTTTGCTGATATATTGTAGCCTGTTTTAACAAAATCTTTTAGTTTCACAATTGT
CATATAAAGGAAAGATATCACAATCTAACCATATAATATATACAGACCTGGTTAAAGTCACCAG
TGTGATATAGAACCACAGCAAGTAAACTGTAAGCTCCGGCTGTCATTCTGTGATAGGGACCGCA
AACTGCTACGAGTTTAGCAAGAGCCTAATGGAGGAAAAAAAGAAAGAGACAAAACAACAAAACA
AAATCATGACGCTGTATAAAAAACAAGTAATATGAAGAAATAGCTGAGGAGTAGACATGGACCT
TCGTTCCATATGTAACTGCATCTTCAAGCTTTCCTTTGTCTAAAGCTGTTTTAGATGACTCCAG
AAGTTGCCTTCCATCAGCAGATGAACATGCTGCTTG
Number of exons covered
AT1G01320.2:7
AT1G01320.3:7
AT1G01320.1:7
Conserved circRNAs
NA
Coding potential
Y
Potential coding position
124777-123581(-)
Potential amino acid sequence
MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELA
LKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQT
AASYHAIAIALSLMEAYHLSVQHEQTTLRILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAAR
NGTPKPDASIASKGHLSVSDLLDYINPSHNAKGKESVAAKRKNYILKQAACSSADGRQLLESSK
TALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN
ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMME
EGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYHLSVQHEQTTLRILRA
KLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTPKPDASIASKGHLSVSDLLDYINPSHNAKG
KESVAAKRKNYILKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMT
AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALK
YVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAA
SYHAIAIALSLMEAYHLSVQHEQTTLRILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNG
TPKPDASIASKGHLSVSDLLDYINPSHNAKGKESVAAKRKNYILKQAACSSADGRQLLESSKTA
LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER
ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG
LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYHLSVQHEQTTLRILRAKL
GPDDLRTQDAAAWLEYFESKAFEQQEAARNGTPKPDASIASKGHLSVSDLLDYINPSHNAKGKE
SVAAKRKNYILK(-)
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Pan et al., 2017

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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