logo





circRNA ID
AT1G01320_circ_g.18
Alias
ath_circ_000052, At_ciR996
Organism
Arabidpsis thaliana
Position
chr1: 125329-125655  JBrowse»
Reference genome
TAIR10.38
Type  
e-circRNA
Identification method
CIRCexplorer, KNIFE, PcircRNA_finder, find_circ, CIRI-full
Parent gene
Parent gene annotation
Tetratricopeptide repeat (TPR)-like superfamily protein
Parent gene strand
-
Splice junction sequence  
CAGCAGAAATCACCGCCTGGAGGATATGCTTAAGGGCTCTTACTATCATCTCATGAACACACAG
CGATTGTACATGTGACAATTTATCTGAAAGCTTCACcttatggcataagcctcggagaatggca
aacttccgtagatccttgtaactgaaggcattaagatcataatcataccgtttcttcaagaatt
tctccaac
Support reads
6/40/2
Tissues
leaf/inflorescences/seedlings
Exon boundary  
Yes-Yes
Splicing signals  
CT-AC
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
CTTATGGCATAAGCCTCGGAGAATGGCAAACTTCCGTAGATCCTTGTAACTGAAGGCATTAAGA
TCATAATCATACCGTTTCTTCAAGAATTTCTCCAACCATCGGAAGATCAGAGGATGTACATTCC
AAGGGTTATGTGGTGTTGCTGCAACATTTTCAGGAATCCCAAGCATCATGTTCAAAGCAGCAGC
TACTTTTATAGCTATTTTGTCAGTGTCAGTAGCAACAGCAGAAATCACCGCCTGGAGGATATGC
TTAAGGGCTCTTACTATCATCTCATGAACACACAGCGATTGTACATGTGACAATTTATCTGAAA
GCTTCAC
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
CTTATGGCATAAGCCTCGGAGAATGGCAAACTTCCGTAGATCCTTGTAACTGAAGGCATTAAGA
TCATAATCATACCGTTTCTTCAAGAATTTCTCCAACCATCGGAAGATCAGAGGATGTACATTCC
AAGGGTTATGTGGTGTTGCTGCAACATTTTCAGGAATCCCAAGCATCATGTTCAAAGCAGCAGC
TACTTTTATAGCTATTTTGTCAGTGTCAGTAGCAACAGCAGAAATCACCGCCTGGAGGATATGC
TTAAGGGCTCTTACTATCATCTCATGAACACACAGCGATTGTACATGTGACAATTTATCTGAAA
GCTTCAC
Number of exons covered
AT1G01320.3:1
AT1G01320.1:1
AT1G01320.2:1
Conserved circRNAs
NA
Coding potential
Y
Potential coding position
125605-125331(-)
Potential amino acid sequence
MIVRALKHILQAVISAVATDTDKIAIKVAAALNMMLGIPENVAATPHNPWNVHPLIFRWLEKFL
KKRYDYDLNAFSYKDLRKFAILRGLCHKVKLSDKLSHVQSLCVHEMIVRALKHILQAVISAVAT
DTDKIAIKVAAALNMMLGIPENVAATPHNPWNVHPLIFRWLEKFLKKRYDYDLNAFSYKDLRKF
AILRGLCHKVKLSDKLSHVQSLCVHEMIVRALKHILQAVISAVATDTDKIAIKVAAALNMMLGI
PENVAATPHNPWNVHPLIFRWLEKFLKKRYDYDLNAFSYKDLRKFAILRGLCHKVKLSDKLSHV
QSLCVHEMIVRALKHILQAVISAVATDTDKIAIKVAAALNMMLGIPENVAATPHNPWNVHPLIF
RWLEKFLKKRYDYDLNAFSYKDLRKFAILRGLCHK(-)
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Ye et al., 2015;Chu et al., 2017;Pan et al., 2017

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

Supported by   nsfc    zju