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circRNA ID
AT1G01320_circ_g.19
Alias
ath_circ_000053
Organism
Arabidpsis thaliana
Position
chr1: 125329-125843  JBrowse»
Reference genome
TAIR10.38
Type  
e-circRNA
Identification method
KNIFE, PcircRNA_finder
Parent gene
Parent gene annotation
Tetratricopeptide repeat (TPR)-like superfamily protein
Parent gene strand
-
Splice junction sequence  
CATATCCTAAAGAACGCATCCGAAGACCTCTTGTGTGCATAAAATCAGTTAGAGTCCGGCCATC
GACTGGGGAGAGCTCCAATGAACCAAAATCTGCAACcttatggcataagcctcggagaatggca
aacttccgtagatccttgtaactgaaggcattaagatcataatcataccgtttcttcaagaatt
tctccaac
Support reads
3
Tissues
whole_plant
Exon boundary  
Yes-Yes
Splicing signals  
CT-AC
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
CTTATGGCATAAGCCTCGGAGAATGGCAAACTTCCGTAGATCCTTGTAACTGAAGGCATTAAGA
TCATAATCATACCGTTTCTTCAAGAATTTCTCCAACCATCGGAAGATCAGAGGATGTACATTCC
AAGGGTTATGTGGTGTTGCTGCAACATTTTCAGGAATCCCAAGCATCATGTTCAAAGCAGCAGC
TACTTTTATAGCTATTTTGTCAGTGTCAGTAGCAACAGCAGAAATCACCGCCTGGAGGATATGC
TTAAGGGCTCTTACTATCATCTCATGAACACACAGCGATTGTACATGTGACAATTTATCTGAAA
GCTTCACCTATTGTCACCATAAAAAAGATATGGATGATCAAAATTCATCTTGAATAGTTTCTAA
GAAACACGAGGTTAAGAAAGCCAACTTACAACATATCCTAAAGAACGCATCCGAAGACCTCTTG
TGTGCATAAAATCAGTTAGAGTCCGGCCATCGACTGGGGAGAGCTCCAATGAACCAAAATCTGC
AAC
Number of exons covered
AT1G01320.3:2
AT1G01320.2:2
AT1G01320.1:2
Conserved circRNAs
NA
Coding potential
Y
Potential coding position
125784-125331(-)
Potential amino acid sequence
MHTRGLRMRSLGYVVKLSDKLSHVQSLCVHEMIVRALKHILQAVISAVATDTDKIAIKVAAALN
MMLGIPENVAATPHNPWNVHPLIFRWLEKFLKKRYDYDLNAFSYKDLRKFAILRGLCHKVADFG
SLELSPVDGRTLTDFMHTRGLRMRSLGYVVKLSDKLSHVQSLCVHEMIVRALKHILQAVISAVA
TDTDKIAIKVAAALNMMLGIPENVAATPHNPWNVHPLIFRWLEKFLKKRYDYDLNAFSYKDLRK
FAILRGLCHKVADFGSLELSPVDGRTLTDFMHTRGLRMRSLGYVVKLSDKLSHVQSLCVHEMIV
RALKHILQAVISAVATDTDKIAIKVAAALNMMLGIPENVAATPHNPWNVHPLIFRWLEKFLKKR
YDYDLNAFSYKDLRKFAILRGLCHKVADFGSLELSPVDGRTLTDFMHTRGLRMRSLGYVVKLSD
KLSHVQSLCVHEMIVRALKHILQAVISAVATDTDKIAIKVAAALNMMLGIPENVAATPHNPWNV
HPLIFRWLEKFLKKRYDYDLNAFSYKDLRKFAILRGLCHK(-)
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Chu et al., 2017

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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