Detail information of AT1G02110_circ_g.1


General Information
CircRNA Name AT1G02110_circ_g.1
ID in PlantcircBase ath_circ_000214
Alias Ath_circ_FC0140
Organism Arabidpsis thaliana
Position chr1: 394228-394451  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, CIRI-full
Parent gene AT1G02110
Parent gene annotation BZIP domain class transcription factor (DUF630 and DUF632)
Parent gene strand +
Alternative splicing 1_circ_ag.36 AT1G02090_circ_g.1 AT1G02090_circ_g.2 AT1G02090_circ_g.3 AT1G02090_circ_g.4 AT1G02100_circ_g.1 AT1G02100_circ_g.2 AT1G02120_circ_g.1 AT1G02120_circ_g.2 AT1G02120_circ_g.3 AT1G02120_circ_g.4 AT1G02120_circ_g.5 AT1G02120_circ_g.6 AT1G02120_circ_g.7 AT1G02120_circ_g.8 AT1G02120_circ_g.9 AT1G02130_circ_g.1 AT1G02130_circ_g.2 AT1G02130_circ_g.3 AT1G02140_circ_g.1 AT1G02145_circ_g.1 AT1G02145_circ_g.2 AT1G02145_circ_g.3 AT1G02145_circ_g.4 AT1G02145_circ_g.5 AT1G02145_circ_g.6 AT1G02145_circ_g.7 AT1G02145_circ_g.8 AT1G02145_circ_g.9 AT1G02170_circ_g.1 AT1G02170_circ_g.2 AT1G02190_circ_g.1 1_circ_ag.2 AT1G02190_circ_g.3 AT1G02190_circ_g.4 AT1G02190_circ_g.5 AT1G02205_circ_g.1 AT1G02205_circ_g.2 AT1G02205_circ_g.3 AT1G02205_circ_g.4 AT1G02205_circ_g.5 1_circ_igg.1 AT1G02280_circ_g.1 AT1G02300_circ_g.1 1_circ_ag.2 AT1G02300_circ_g.3 1_circ_ag.4 1_circ_ag.5 AT1G02300_circ_g.6 AT1G02300_circ_g.7 1_circ_ag.8 AT1G02300_circ_g.9 1_circ_ag.10 1_circ_ag.11 1_circ_ag.12 AT1G02305_circ_g.1 AT1G02305_circ_g.2 AT1G02305_circ_g.3 AT1G02305_circ_g.4 AT1G02305_circ_g.5 AT1G02305_circ_g.6 AT1G02305_circ_g.7
Support reads 1
Tissues aerial
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT1G02110.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCATCATTGTTTCTTCAGAAGCTGTTTTAACCACGTCTAATGCCATTCTCCGCCTCCGGGACAC
TGACCTTGTCCCTCAGCTTGTTGAACTCTGCCACGGgcaagagaaggagttaagattgagcacg
agaagaagctgtctgcgctgcagagtcaggagtataagggaggtgatgaatccaagctagacaa
gactaaaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 224
Transcript exons: 394228-394451
GCAAGAGAAGGAGTTAAGATTGAGCACGAGAAGAAGCTGTCTGCGCTGCAGAGTCAGGAGTATA
AGGGAGGTGATGAATCCAAGCTAGACAAGACTAAAACTTCCATAACCAGACTGCAATCACTCAT
CATTGTTTCTTCAGAAGCTGTTTTAACCACGTCTAATGCCATTCTCCGCCTCCGGGACACTGAC
CTTGTCCCTCAGCTTGTTGAACTCTGCCACGG

Transcript length: 224
Transcript exons: 394228-394451
GTAAGAGAAGGAGTTAAGATTGAGCACGAGAAGAAGCTGTCTGCGCTGCAGAGTCAGGAGTATA
AGGGAGGTGATGAATCCAAGCTAGACAAGACTAAAACTTCCATAACCAGACTGCAATCACTCAT
CATTGTTTCTTCAGAAGCTGTTTTAACCACGTCTAATGCCATTCTCCGCCTCCGGGACACTGAC
CTTGTCCCTCAGCTTGTTGAACTCTGCCACGG

Genomic sequence GCAAGAGAAGGAGTTAAGATTGAGCACGAGAAGAAGCTGTCTGCGCTGCAGAGTCAGGAGTATA
AGGGAGGTGATGAATCCAAGCTAGACAAGACTAAAACTTCCATAACCAGACTGCAATCACTCAT
CATTGTTTCTTCAGAAGCTGTTTTAACCACGTCTAATGCCATTCTCCGCCTCCGGGACACTGAC
CTTGTCCCTCAGCTTGTTGAACTCTGCCACGG
Conservation Information
Conserved circRNAs NA
PMCS 0.570497078
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017;Chen et al., 2017a