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circRNA ID
AT1G02120_circ_g.2
Alias
ath_circ_000216
Organism
Arabidpsis thaliana
Position
chr1: 397099-397673  JBrowse»
Reference genome
TAIR10.38
Type  
i-circRNA
Identification method
CIRCexplorer
Parent gene
Parent gene annotation
Protein VASCULAR ASSOCIATED DEATH 1, chloroplastic
Parent gene strand
+
Splice junction sequence  
TCCTATATTACTGAACCGGTTATTTCGTTTTTGCATACATGATCTCTCATCTATTTCTTTTGGT
TATCGTGATCTCTTTTCTTGTTCTCATTTGTATTCAgtagttaaactccttcctcgcttttacc
ttagttctttttggttggtttgggtagtgtggtagattatctttttcaagtcaactgtttaagg
atgtgaat
Support reads
1
Tissues
whole_plant
Exon boundary  
No-No
Splicing signals  
CC-AT
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
GTAGTTAAACTCCTTCCTCGCTTTTACCTTAGTTCTTTTTGGTTGGTTTGGGTAGTGTGGTAGA
TTATCTTTTTCAAGTCAACTGTTTAAGGATGTGAATGCTAGTGTTTTCAGTAAATTCAACGGGT
TTTTTTTTTTTTGCTGGGGTCAGGTCAACCTGTTGGTAAAGAGTATTAAAAATGCAGACGCTTG
GGTTTCTCCTAACTCCTTTAAAGTTCCTTTAAAGTGGACAATCAGTTAACTTCTTACTGTTTCT
AGGTATATGTCATTATGTGTCTATCTTTTAGCTTGTTTTCTTTGCAATATAAATTGTTTGAAAT
TTAAATGGTCAATGGGAAACGGTCTCTTAATGGTTTTGCTAAATAAGGCCTATCAGGATGGGGT
AGCTTAGCTTTATGATCTTGTCTTTTGGTGCTACTTCACAAGTTGCACTAGTTCTCAGTTTGTC
CCAACGAGCTTGCACTCAGTATGGAGATCCTATATTACTGAACCGGTTATTTCGTTTTTGCATA
CATGATCTCTCATCTATTTCTTTTGGTTATCGTGATCTCTTTTCTTGTTCTCATTTGTATTCA
Number of exons covered
0
Conserved circRNAs
NA
Coding potential
N
Potential coding position
NA
Potential amino acid sequence
NA
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Chu et al., 2017

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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