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circRNA ID
AT1G02120_circ_g.5
Alias
ath_circ_000219
Organism
Arabidpsis thaliana
Position
chr1: 397877-398526  JBrowse»
Reference genome
TAIR10.38
Type  
e-circRNA
Identification method
PcircRNA_finder
Parent gene
Parent gene annotation
Protein VASCULAR ASSOCIATED DEATH 1, chloroplastic
Parent gene strand
+
Splice junction sequence  
TCTGTTAGCTAATATTGTAATTTCCTATGCTAGCCATCTGGTTATTGAAACATCACAGGAGATC
AGCGATGTGCCTTATGCAGATTATTTTACGGTAGAGattccagtagaagagttctttagattgt
ttttttcagatggtgctgtcagttttgttgaatctttccataaaaattgtggagacaaaggtaa
agctataa
Support reads
2
Tissues
whole_plant
Exon boundary  
Yes-Yes
Splicing signals  
GT-AG
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
ATTCCAGTAGAAGAGTTCTTTAGATTGTTTTTTTCAGATGGTGCTGTCAGTTTTGTTGAATCTT
TCCATAAAAATTGTGGAGACAAAGGTAAAGCTATAAGTGATGGAATCATTTTGCTCCTGTGTTT
AGCTGTTTTCTCTCTCTTTCTCGGTGTTCTTTTAACCAGAAGAGATATTTGTACTTGCAGAGTT
TAGGTGTACCTCTTGGCAACCTCATGAAAAGCTTGGACACACCCGCAATGTCTCATTTCAACAT
CCGATAAAAATTTATTTTGGTAATATTTTTTCTTTCCTATAGATAAACAGTACTAGATTACGGT
TTATATCAAATATATATTTTTTTGGTGTAATTATATAAAATAGATTACGGTTTATATCAAATAT
ATGTATGCATGACTCTGGCTTTCGTTTAAAGGTGCAAAGTTTGGTGGCTGCCAGGAGTCACAGA
AATTTCGGATGTACAGAAATAGGTACAGAAATTTTGTAATGTTTTTTGGTTTTATTCTATATCG
TCAAAGCAAAGCTAGTCTGAACTCATGCATGCTTATCCTCTGTTAGCTAATATTGTAATTTCCT
ATGCTAGCCATCTGGTTATTGAAACATCACAGGAGATCAGCGATGTGCCTTATGCAGATTATTT
TACGGTAGAG
Number of exons covered
AT1G02120.3:4
AT1G02120.1:4
AT1G02120.2:4
Conserved circRNAs
NA
Coding potential
Y
Potential coding position
398333-398523(+)
Potential amino acid sequence
MYRNSHLVIETSQEISDVPYADYFTVEIPVEEFFRLFFSDGAVSFVESFHKNCGDKEFRCTSWQ
PHEKLGHTRNVSFQHPIKIYFGAKFGGCQESQKFRMYRNSHLVIETSQEISDVPYADYFTVEIP
VEEFFRLFFSDGAVSFVESFHKNCGDKEFRCTSWQPHEKLGHTRNVSFQHPIKIYFGAKFGGCQ
ESQKFRMYRNSHLVIETSQEISDVPYADYFTVEIPVEEFFRLFFSDGAVSFVESFHKNCGDKEF
RCTSWQPHEKLGHTRNVSFQHPIKIYFGAKFGGCQESQKFRMYRNSHLVIETSQEISDVPYADY
FTVE(+)
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Chu et al., 2017

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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