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circRNA ID
AT1G02100_circ_g.1
Alias
ath_circ_000212, 1:390762-391263
Organism
Arabidpsis thaliana
Position
chr1: 390762-391263  JBrowse»
Reference genome
TAIR10.38
Type  
e-circRNA
Identification method
find_circ; CIRI2
Parent gene
Parent gene annotation
Leucine carboxyl methyltransferase
Parent gene strand
+
Splice junction sequence  
AGATACGAATCTTATTGCTTATGTGTCTAACCCGTTGGGTTTCTGTTTGCAGATCCATCCAGAT
GATGCATTTGGGCATCAAATGATTAGAAATTTGGAGacgaaggacaagttctcagtgatcatta
caagttacttccagttgacctgcgcgatataccaaaattaagagatgttatatcctttgcagat
atggatct
Support reads
2
Tissues
leaf
Exon boundary  
Yes-Yes
Splicing signals  
GT-AG
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
ACGAAGGACAAGTTCTCAGTGATCATTACAAGTTACTTCCAGTTGACCTGCGCGATATACCAAA
ATTAAGAGATGTTATATCCTTTGCAGATATGGATCTAAGGTATCCATGAATAATTTTTATTTAT
TTTACACACTGTTATCTTGAACCTTCAACCCTCTTCTTCTACCCGGGTTTAAGATATATGGTAA
CAGATACTTACTGGTGATAGACCTACTTGATCCCTAATATCATTATCAGTCTGCCGACGTTTAT
TATTGCAGAATGTGTTTTGATTTATCTGGACCCCGATTCAAGCCGTGCCATCGTCAATTGGTCG
TCAAAAACGTTTTCAACTGCAGTATTTTTCTTATATGAGCAGGTTAGCTCAACTGTGATTTTCC
TTGTCTGCATAATATTGCAGATACGAATCTTATTGCTTATGTGTCTAACCCGTTGGGTTTCTGT
TTGCAGATCCATCCAGATGATGCATTTGGGCATCAAATGATTAGAAATTTGGAG
Number of exons covered
AT1G02100.3:3
AT1G02100.2:3
AT1G02100.1:3
Conserved circRNAs
NA
Coding potential
NA
Potential coding position
NA
Potential amino acid sequence
NA
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Philips et al., 2020

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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