Detail information of 1_circ_ag.2


General Information
CircRNA Name 1_circ_ag.2
ID in PlantcircBase ath_circ_000240
Alias NA
Organism Arabidpsis thaliana
Position chr1: 416045-419894  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 1_circ_ag.36 AT1G02090_circ_g.1 AT1G02090_circ_g.2 AT1G02090_circ_g.3 AT1G02090_circ_g.4 AT1G02100_circ_g.1 AT1G02100_circ_g.2 AT1G02110_circ_g.1 AT1G02120_circ_g.1 AT1G02120_circ_g.2 AT1G02120_circ_g.3 AT1G02120_circ_g.4 AT1G02120_circ_g.5 AT1G02120_circ_g.6 AT1G02120_circ_g.7 AT1G02120_circ_g.8 AT1G02120_circ_g.9 AT1G02130_circ_g.1 AT1G02130_circ_g.2 AT1G02130_circ_g.3 AT1G02140_circ_g.1 AT1G02145_circ_g.1 AT1G02145_circ_g.2 AT1G02145_circ_g.3 AT1G02145_circ_g.4 AT1G02145_circ_g.5 AT1G02145_circ_g.6 AT1G02145_circ_g.7 AT1G02145_circ_g.8 AT1G02145_circ_g.9 AT1G02170_circ_g.1 AT1G02170_circ_g.2 AT1G02190_circ_g.1 AT1G02190_circ_g.3 AT1G02190_circ_g.4 AT1G02190_circ_g.5 AT1G02205_circ_g.1 AT1G02205_circ_g.2 AT1G02205_circ_g.3 AT1G02205_circ_g.4 AT1G02205_circ_g.5 1_circ_igg.1 AT1G02280_circ_g.1 AT1G02300_circ_g.1 1_circ_ag.2 AT1G02300_circ_g.3 1_circ_ag.4 1_circ_ag.5 AT1G02300_circ_g.6 AT1G02300_circ_g.7 1_circ_ag.8 AT1G02300_circ_g.9 1_circ_ag.10 1_circ_ag.11 1_circ_ag.12 AT1G02305_circ_g.1 AT1G02305_circ_g.2 AT1G02305_circ_g.3 AT1G02305_circ_g.4 AT1G02305_circ_g.5 AT1G02305_circ_g.6 AT1G02305_circ_g.7
Support reads 96
Tissues inflorescences
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGACTTCATGAACAACATGGGACACTGCAACTTCGAGCTAATCCCTAAGCGCCTTTTCCACCT
CTTTCCTCCCCTCAAGTTCCTCTGTTACACCCCCTCgtttcactcgctccaccacacgcagttc
cggaccaactactctctgttcatgccaatatacgacttcatctacgggacgactgataatttga
ccgactca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTTCACTCGCTCCACCACACGCAGTTCCGGACCAACTACTCTCTGTTCATGCCAATATACGAC
TTCATCTACGGGACGACTGATAATTTGACCGACTCACTATACGAGAGGTCGTTGGAGATAGAGG
AAGAATCACCCGACGTCATCCACCTCACTCACCTCACCACACACAACTCCATCTACCAAATGCG
CCTTGGTTTCCCGTCCCTCTCCTCTTGCCCCTTGTGGTCTCGACCCCCATGGTACCTCACATGC
TTCATGTGGCCCTTCACTCTCCTCTGCTCATTTGCCCTCACTTCAGCTATCCCTTTGCGCACCT
TTGTCTTTGAGCGAAACCGTCTCCGTGACCTCACCGTTCACTCTCACCTCCTTCCCAAGTTTTC
CTTTCACGTAAGCATTTTACACGCATGCATATGCACTTTCCCTCTCTCTCGCTCTCTTGACACA
AACGGGTTTACTTATTATGTTGTACTTCACACCACTATTTTCCAAACTTTCACACACAAAAAAA
ACATTGATTCTCACTTAACTTGTACGTACTACGTAGGAAGGACATAACCTTTTATACAAAAAGA
AAATTAAAACAACCTAAAAATGAACAATGAACATTTTCTTGTGGGTATACCTTTTGTAAGTTGC
ATCTAAAGTTTATTAATAATTTTGCCTCATAAACATGCGGCGGTAGTATAAATCACAGCGCCAC
CATGAGTCCATCAACACTATCATAGAGGAAGCTATCCTTGAAGCAGATGAAAAGGGTGTGAAAG
TAATGAGTCTTGGCCTGATGAACAATGTAAGTTTATTTACTTCAAATCCCCCTAAATATATATG
AATCACTATTGGATAAGTACTGTAACTAATTACACACGCTGGCAAAAGAAAAAAGTAACTAATC
AACACACAATTAATTAATGAGAGGGAGGAACTAAACGGGTCTGGAGAAATGTACGTGCAAAAGT
ATCCGAAGTTGAAGATAAGACTAGTGGACGGGAGCAGCATGGCAGCTACGGTGGTTATCAACAA
TATTCCAAAGGAAGCCACGGAAATTGTCTTTAGAGGAAATCTCACAAAGGTGGCTTCGGCTGTT
GTCTTTGCTCTGTGCCAAAAGGGCGTCAAGGTTTGTGAATATATGAGGGAATTGGAATATATAT
ACTCAGCTTCTCATATCAAACAAAAAATAATGTAGTAATGTGTATATATAGGTGGTCGTGTTAC
GCGAGGAGGAACACAGCAAACTCATCAAATCTGGGGTTGACAAGAATCTGGTACTGTCTACAAG
CAATAGTTATTACTCCCCAAAGGTGTGGTTGGTGGGGGATGGAATAGAGAACGAAGAGCAGATG
AAAGCAAAAGAAGGAACCCTCTTTGTTCCCTTTTCTCACTTTCCGCCCAACAAACTCCGCAAGG
ACTGTTTCTACCAGTCCACTCCAGCTATGCGTGTTCCCAAGTCTGCCCAAAACATCGACTCCTG
TGAGGTACATCTTTGAATTCTTATAGATATATCTGTAACTTTTATATTATATAAGCTGATAGAT
GTGTTCATCTATAATGAATGAATGGTTGTTATATATATATAGAACTGGCTGGGGAGGAGGGTGA
TGAGTGCATGGAAAATAGGAGGTATAGTGCATGCACTTGAGGGTTGGGAGGAGCATGACTGCGG
CAACACTTGCAACGTCCTCCGTCTCCACGCCATATGGGAAGCTGCTCTTCGCCATGATTTCCAA
CCTCTCCCACCATCTCCTCTATGAGCTTTTTTCATATTCATACATCTATGTCCCCTTTCTTGAT
TATATCTACTTCCCTTCCATCATTGTTTGCTGTTTACTATGTTTTTCTATCGACAATATATAAG
TACCCTTGTTACCCTTGGTGCCACGTGCTTCATATATGTTAGAAAGGGCAAAAAAATTCGTCGT
ATGATATGCTTAGTTAAATTTTATAAAACTCAATAAAAATCTTCAGAAACAGTGCTATGATCAT
TACATCTTAACTAAGTGATATATATCTGCGTGCCTATTTAACAAAATAAACAAAAAAACAAAAC
AAAATATATTTGGGTGCATCATCAAATCAAAGTAGTTGCAAAAACTGGACGAGGTTTTTACTTA
AATGGTCCTTACCCCGCATGGTCCACTTGCTACCTAATTAAGGATTGGTAGGGTGCGTATACGT
ATATAAATTGTGGCGGTGGGAGATGGAGTTACTAAAAACGAAACGTACAAGTATTATTCATAGC
TCTCGTATAAGGGGTTAGTCCTTAGATCTAGATATTTTCACTTTTCTTTCATTTATGTCGGAGC
AACAGACACTAGCTGGCGCTTCAACGTGCATGATCTTGATTGGCTAGTAAATTCCAAGCATCAA
TACCTAACACATGCCCAACTTGGTTCATTAGTATTCTTTCATTGGTAAAATACCCTTACCTTTC
AATAATATCCAGAAATAAATATATGAAGCCATCCATCAACCGGTGCATTTCCTCAAGGCATGGA
TATGATATCAGAACATCGATGAAGGTGGGAGGGGGTAATTAGCTGAGTGTCATAAATGAGGATC
CATGTGGAGATCATCGAATGGTAGTAGTACATGTTTGGTCTTAGCTGGCCCCACCACAAGGAAT
TGGACTGGTGGGAAGATAGGGGTGGTTACGTCATTCCACATATCTACCAATTAAGGAGTTTAAT
ATAAACCTTGCTATATAATGTACCTTGGCTCACAAGAGTTGAAGAGACACAGTGACGACACAAA
CATATTACATTCGACGGTATAATGGCCACAAAACCAGGAGTCCTCACCGATTGGCCTTGGACAC
CCCTCGGAAGTTTCAAGGTGCACTCTGTTTTCTTGTCCTTTAAATTTAAAAAAACGCGTGCTTA
TGATCGAATCCCGTTACGTTACTGATATATATGTTTTTCTTGACATTGAAACAATACAAAAGTA
CATCGTAATAGCACCATGGGCTGTCCATAGCACATACAGGTTTGTGACAGATGATCCAGAGAAG
AGGGATCTCGGGTACTTCCTTGTGTTCCCATTCTTGCTCTTCAGAATTCTGCACAACCAGGTTT
GGATCTCTCTGTCCCGTTACTATACGTCCTCGGGAAAGAGACGCATCGTCGACAAGGGAATCGA
CTTCAATCAGGTCGACAGGGAGACCAACTGGTGCGCTTTTCTAAATTTTTAACTACCTGCGTGC
CTCGTGAGTATATGTAATCAACGTAACTAATGAAATCCTGATATATGCGCAGGGATGACCAAAT
ATTGTTCAACGGAGTGCTGTTCTATATAGGCATCAACCTATTGCCGGAGGCCAAACAACTTCCC
TGGTGGAGAACTGACGGAGTGTTGATGGCAGCGCTTATTCACACCGGACCGGTGGAGTTCCTCT
ATTATTGGCTCCACAAAGCTCTCCACCATCACTTTCTTTATTCCCGCTACCATTCCCACCACCA
CTCCTCTATCGTCACTGAGCCCATCACTTGTAACTATTGTTTCTTACCTTGATTTTTACGCTGC
CTATATTTCCGTTTTTCTTTTTATAATTATTATACGTAAAATATACATCGTTCACGTCCTAACT
AGTAGCTTTTATCTGTATATAATGGGATTTGATCAAATGTATGCAGCGGTGATACATCCGTTTG
CGGAGCACATAGCATACTTCATCCTCTTCGCGATACCACTACTTACCACGTTGCTAACAAAAAC
GGCGTCAATAATTTCGTTCGCCGGATACATAATCTACATAGACTTCATGAACAACATGGGACAC
TGCAACTTCGAGCTAATCCCTAAGCGCCTTTTCCACCTCTTTCCTCCCCTCAAGTTCCTCTGTT
ACACCCCCTC
Conservation Information
Conserved circRNAs NA
PMCS 0.329249205
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017