Detail information of AT1G02120_circ_g.4


General Information
CircRNA Name AT1G02120_circ_g.4
ID in PlantcircBase ath_circ_000218
Alias 1:397877-398346
Organism Arabidpsis thaliana
Position chr1: 397877-398346  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT1G02120
Parent gene annotation Protein VASCULAR ASSOCIATED DEATH 1, chloroplastic
Parent gene strand +
Alternative splicing 1_circ_ag.36 AT1G02090_circ_g.1 AT1G02090_circ_g.2 AT1G02090_circ_g.3 AT1G02090_circ_g.4 AT1G02100_circ_g.1 AT1G02100_circ_g.2 AT1G02110_circ_g.1 AT1G02120_circ_g.1 AT1G02120_circ_g.2 AT1G02120_circ_g.3 AT1G02120_circ_g.5 AT1G02120_circ_g.6 AT1G02120_circ_g.7 AT1G02120_circ_g.8 AT1G02120_circ_g.9 AT1G02130_circ_g.1 AT1G02130_circ_g.2 AT1G02130_circ_g.3 AT1G02140_circ_g.1 AT1G02145_circ_g.1 AT1G02145_circ_g.2 AT1G02145_circ_g.3 AT1G02145_circ_g.4 AT1G02145_circ_g.5 AT1G02145_circ_g.6 AT1G02145_circ_g.7 AT1G02145_circ_g.8 AT1G02145_circ_g.9 AT1G02170_circ_g.1 AT1G02170_circ_g.2 AT1G02190_circ_g.1 1_circ_ag.2 AT1G02190_circ_g.3 AT1G02190_circ_g.4 AT1G02190_circ_g.5 AT1G02205_circ_g.1 AT1G02205_circ_g.2 AT1G02205_circ_g.3 AT1G02205_circ_g.4 AT1G02205_circ_g.5 1_circ_igg.1 AT1G02280_circ_g.1 AT1G02300_circ_g.1 1_circ_ag.2 AT1G02300_circ_g.3 1_circ_ag.4 1_circ_ag.5 AT1G02300_circ_g.6 AT1G02300_circ_g.7 1_circ_ag.8 AT1G02300_circ_g.9 1_circ_ag.10 1_circ_ag.11 1_circ_ag.12 AT1G02305_circ_g.1 AT1G02305_circ_g.2 AT1G02305_circ_g.3 AT1G02305_circ_g.4 AT1G02305_circ_g.5 AT1G02305_circ_g.6 AT1G02305_circ_g.7
Support reads 1/2
Tissues leaf;flower
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT1G02120.2:3
AT1G02120.1:3
AT1G02120.3:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTATATCAAATATATGTATGCATGACTCTGGCTTTCGTTTAAAGGTGCAAAGTTTGGTGGCTG
CCAGGAGTCACAGAAATTTCGGATGTACAGAAATAGattccagtagaagagttctttagattgt
ttttttcagatggtgctgtcagttttgttgaatctttccataaaaattgtggagacaaaggtaa
agctataa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTCCAGTAGAAGAGTTCTTTAGATTGTTTTTTTCAGATGGTGCTGTCAGTTTTGTTGAATCTT
TCCATAAAAATTGTGGAGACAAAGGTAAAGCTATAAGTGATGGAATCATTTTGCTCCTGTGTTT
AGCTGTTTTCTCTCTCTTTCTCGGTGTTCTTTTAACCAGAAGAGATATTTGTACTTGCAGAGTT
TAGGTGTACCTCTTGGCAACCTCATGAAAAGCTTGGACACACCCGCAATGTCTCATTTCAACAT
CCGATAAAAATTTATTTTGGTAATATTTTTTCTTTCCTATAGATAAACAGTACTAGATTACGGT
TTATATCAAATATATATTTTTTTGGTGTAATTATATAAAATAGATTACGGTTTATATCAAATAT
ATGTATGCATGACTCTGGCTTTCGTTTAAAGGTGCAAAGTTTGGTGGCTGCCAGGAGTCACAGA
AATTTCGGATGTACAGAAATAG
Conservation Information
Conserved circRNAs NA
PMCS 0.190015692
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020