Detail information of AT1G02120_circ_g.3


General Information
CircRNA Name AT1G02120_circ_g.3
ID in PlantcircBase ath_circ_000217
Alias NA
Organism Arabidpsis thaliana
Position chr1: 397877-398151  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT1G02120
Parent gene annotation Protein VASCULAR ASSOCIATED DEATH 1, chloroplastic
Parent gene strand +
Alternative splicing 1_circ_ag.36 AT1G02090_circ_g.1 AT1G02090_circ_g.2 AT1G02090_circ_g.3 AT1G02090_circ_g.4 AT1G02100_circ_g.1 AT1G02100_circ_g.2 AT1G02110_circ_g.1 AT1G02120_circ_g.1 AT1G02120_circ_g.2 AT1G02120_circ_g.4 AT1G02120_circ_g.5 AT1G02120_circ_g.6 AT1G02120_circ_g.7 AT1G02120_circ_g.8 AT1G02120_circ_g.9 AT1G02130_circ_g.1 AT1G02130_circ_g.2 AT1G02130_circ_g.3 AT1G02140_circ_g.1 AT1G02145_circ_g.1 AT1G02145_circ_g.2 AT1G02145_circ_g.3 AT1G02145_circ_g.4 AT1G02145_circ_g.5 AT1G02145_circ_g.6 AT1G02145_circ_g.7 AT1G02145_circ_g.8 AT1G02145_circ_g.9 AT1G02170_circ_g.1 AT1G02170_circ_g.2 AT1G02190_circ_g.1 1_circ_ag.2 AT1G02190_circ_g.3 AT1G02190_circ_g.4 AT1G02190_circ_g.5 AT1G02205_circ_g.1 AT1G02205_circ_g.2 AT1G02205_circ_g.3 AT1G02205_circ_g.4 AT1G02205_circ_g.5 1_circ_igg.1 AT1G02280_circ_g.1 AT1G02300_circ_g.1 1_circ_ag.2 AT1G02300_circ_g.3 1_circ_ag.4 1_circ_ag.5 AT1G02300_circ_g.6 AT1G02300_circ_g.7 1_circ_ag.8 AT1G02300_circ_g.9 1_circ_ag.10 1_circ_ag.11 1_circ_ag.12 AT1G02305_circ_g.1 AT1G02305_circ_g.2 AT1G02305_circ_g.3 AT1G02305_circ_g.4 AT1G02305_circ_g.5 AT1G02305_circ_g.6 AT1G02305_circ_g.7
Support reads 1
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT1G02120.1:2
AT1G02120.3:2
AT1G02120.2:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTGTACTTGCAGAGTTTAGGTGTACCTCTTGGCAACCTCATGAAAAGCTTGGACACACCCGCA
ATGTCTCATTTCAACATCCGATAAAAATTTATTTTGattccagtagaagagttctttagattgt
ttttttcagatggtgctgtcagttttgttgaatctttccataaaaattgtggagacaaaggtaa
agctataa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTCCAGTAGAAGAGTTCTTTAGATTGTTTTTTTCAGATGGTGCTGTCAGTTTTGTTGAATCTT
TCCATAAAAATTGTGGAGACAAAGGTAAAGCTATAAGTGATGGAATCATTTTGCTCCTGTGTTT
AGCTGTTTTCTCTCTCTTTCTCGGTGTTCTTTTAACCAGAAGAGATATTTGTACTTGCAGAGTT
TAGGTGTACCTCTTGGCAACCTCATGAAAAGCTTGGACACACCCGCAATGTCTCATTTCAACAT
CCGATAAAAATTTATTTTG
Conservation Information
Conserved circRNAs NA
PMCS 0.190987
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017