Detail information of Zm00001d033850_circ_g.17


General Information
CircRNA Name Zm00001d033850_circ_g.17
ID in PlantcircBase zma_circ_003702
Alias ovule_test_circ_001132
Organism Zea mays
Position chr1: 275843280-275847141  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d033850
Parent gene annotation alpha tubulin1
Parent gene strand +
Alternative splicing Zm00001d033850_circ_g.1 Zm00001d033850_circ_g.2 Zm00001d033850_circ_g.3 Zm00001d033850_circ_g.4 Zm00001d033850_circ_g.5 Zm00001d033850_circ_g.6 Zm00001d033850_circ_g.7 Zm00001d033850_circ_g.8 Zm00001d033850_circ_g.9 Zm00001d033850_circ_g.10 Zm00001d033850_circ_g.11 Zm00001d033850_circ_g.12 Zm00001d033850_circ_g.13 Zm00001d033850_circ_g.14 Zm00001d033850_circ_g.15 Zm00001d033850_circ_g.16 Zm00001d033850_circ_g.18 Zm00001d033850_circ_g.19 Zm00001d033850_circ_g.20 Zm00001d033850_circ_g.21
Support reads NA
Tissues ovule
Exon boundary   No-No
Splicing signals   CT-CA
Number of exons covered Zm00001d033850_T001:1
Zm00001d033850_T015:1
Zm00001d033850_T016:1
Zm00001d033850_T017:4
Zm00001d033850_T006:4
Zm00001d033850_T002:1
Zm00001d033850_T009:1
Zm00001d033850_T008:3
Zm00001d033850_T014:1
Zm00001d033850_T018:4
Zm00001d033850_T023:4
Zm00001d033850_T020:4
Zm00001d033850_T010:1
Zm00001d033850_T003:1
Zm00001d033850_T024:2
Zm00001d033850_T019:4
Zm00001d033850_T011:1
Zm00001d033850_T013:1
Zm00001d033850_T005:3
Zm00001d033850_T021:5
Zm00001d033850_T004:4
Zm00001d033850_T007:4
Zm00001d033850_T022:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGGATGGCGACGAGGGTGACGAGTACTAGAGAAGTTTGCTGATGACGCAGCATCAGGCCAGTG
TGCTGCCCTTATCCCGTGATCTGCCGAGAGTTGCTCcctgatgttgtaagactttctggttatg
tccgccccgctgtgccactgggttattaagaacgtcgttatggatggttgtctacactacatta
ttgcttct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGATGTTGTAAGACTTTCTGGTTATGTCCGCCCCGCTGTGCCACTGGGTTATTAAGAACGTC
GTTATGGATGGTTGTCTACACTACATTATTGCTTCTCGATATTGGAAAACTGTTATGCGCCTCG
GTGGATTGTGTTGTTGTCGTAATGTCATCACTCATACGCCGCTGGGAATTTTGAGGCCTGTCAA
GCATCAGGATTGCGTTATGAGTTAAATGCTTCAGCGACGTTTAAACTTGTCTAAGGTGCCATCT
AGATCATGAACTTGTCAAGGGTTGCCACTTAGATCATGAACTTCGTAAATATGTTTTTGGATCC
AAAATATGTTTTTGATCCTTAAGGGTGTGTTTGGTTGAATGTATAAGAAGGGATGAAAGAGGAA
TGTCATAATTTCTATAGTGTTTGGTTGAGAGACAAGTGAGGACGAGATAAATACCTAAGAAGGG
ATGAAAGAGGAATGCCACAATTTCTATAGTGTTTGGTTCAGAGACAAGTGACAATTTCTATAGT
GTTTGGTTGAGAGACAAGTGAGGGCGAGTAAATACCGCAATAATTTTTTGGTGGCACCGAATTT
TTGTGAAGTTGTATACATTTTGGACACCAATAGAAAATAGAATTAAAAAAATATAAAACTGGTG
TCATTTAAATCAGTGTCACGTTATTAAAATTTAAAACTATCAACTAAAATTGTCTAATGGATTA
TTTATGTGGTTTTGTAAAGTTGTGGAGATTAAACAACCAGTTTTGAAGATAAGTAAGTGAAATA
GTCAAATATAAAACTAGGTTAAGAATTTAGGTACACTTACGACTAGTTTAGATGCCGCAAAATG
GGTTAAATTTTTCTTCTTATTCAAAATTAAATAATAAGGTGAATTTAACTACTCTAATTTCCTC
TGTTTTTTTAACTCCCAAACTATCCCTTATTCGTAATAATAGGAAGCGGTGACAGTTTGGTGGT
GAGAACTCAGGTATCAACAAAAAGAAATGTATTTTTGAAATATTTTGCTCGTAATGCCCTGCAA
GGTTTCGATTTCCGTAGCCAGTACATGTCCGCTCTTGACCCAGGTACTGTGTCACGAACCAACC
GACCGTTGAACGGACGTGGAGCACGAACCATTAAAACAATCAAAATCTCAGGGGCTCAAACGAA
AAAACACCGCCCCCTTCCCTCGCTTGCGCTGGCACTCCATCGTGGGCTCGTGGCCCAGGCTGTC
GTTCTGTTCTATAAAGCGAGACGAGTGGGAGCAGGCGTAACCCTAATTGAGCATCGCAGAGATA
GGCGTCTTCGTACTCGCCTACCTCCGCGGCTCAAACCTTTCCCCCTTCTCCCAATTCCTTCCGC
CGGCCGCCGCTCCACCCGTACGACGACACCATGAGGGAGTGCATTTCGATCCACATCGGCCAGG
CCGGTATCCAGGTCGGAAACGCGTGCTGGGAGCTGTACTGCCTTGAGCATGGCATTCAGGTAAC
GATCCGTCATTCCCTCCCCCGTTCTCCCTCTGTTGAGGTAGATCTATAATCGGTATGGGGGTTT
CATCGCTAATATTTGCTGGATTTTTGGTGGGGCTGAATCCGCCGGAGGAAATGACGTTTCAAAT
CGGTAGATCTGTACGGATCTGGATGCATGTAATGGTGGCTACCCGGATCCGGGTTTGCTAGGTC
TGATCCGGAGAACTGGTGTCTGAGCGAGATTGCAATTGTTTTTGAACTGGAATTTTGATACGTA
GAATTTGAATAGGGATCACCCGAAACCCACGTGCGTGGTAGATCTGAGTGCCCAGAATTCGTTT
AAATGTACTGTCAGTTTGGATCTTTGAATTTTCATAGGCTAAGTTCCGTATTGCCTGTTGATAT
GTGAGCCTTGATGTACAAATACAGACTATAGTATGTTTAGTGTTAATTTGATGTGAGCCTTGAT
GAATTTTCACAGGCTAAGTTCCATGCCCACAATGCATCCATTCATACTGTTATTAATTCTGTAA
AAAAAACGAATACACGTCACTCTTAGGCACCTTAACCCAATTTGCATTTTTCTGTTTAAATCTG
TTAGAAATGGGATAGAGACTGGCATGTTGTTATGTAGTCCTAGCTGTTATTAGCTTTATCTAGG
ACTAAATGCTGTTCACATATTTCAAGTGTTTGCAATCGGAGATTCAATCATGGCTCCCTAGGAC
ATTTGAATCGTGTGTCATAGTTTGAAATATGAGATTCAGGCCTGTGTTACCTTAAGATCATGCA
TCTGTCTGGTCTACTACTGTAGATGGCATGTATTTTTTACATAGACTCCTTAAGTCGCATATTA
ACACTACTACATTTGTGTTTTGTTCAGGCTGACGGTCAGATGCCCGGTGACAAGACCATTGGGG
GAGGTGATGATGCTTTCAACACCTTCTTCAGTGAGACTGGTGCTGGGAAGCACGTGCCCCGTGC
TGTTTTTGTTGACCTTGAACCCACTGTCATCGATGAGGTGAGAACTGGCACCTACCGCCAGCTC
TTCCACCCTGAGCAGCTCATCAGTGGGAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACT
ACACCAGTAAGTAATCTGATCTGAGCGTCAGTTTTCACTGCTCCTTGATATTTGCTCTGTAATG
AACATCTCATTTAAACCTGATTCCTTGTTTTGCAGTTGGCAAGGAGATTGTTGACCTGTGCCTT
GATCGCATCAGGAAGCTTGCCGACAACTGCACTGGTCTCCAGGGCTTCCTCGTCTTCAACGCTG
TTGGTGGAGGAACGGGCTCTGGCCTTGGTTCCCTCCTCCTAGAGCGCCTGTCTGTTGACTACGG
CAAGAAATCCAAGCTTGGGTTCACTGTGTACCCTTCCCCCCAAGTTTCTACTTCGGTAGTTGAG
CCATACAACAGTGTACTGTCCACCCACTCCCTCCTCGAGCACACTGATGTGGCTATACTGCTGG
ACAATGAGGCCATCTACGACATCTGCCGCCGATCCCTTGACATTGAGCGCCCAACCTACACCAA
CCTCAACAGGCTTGTGTCCCAGGTACTGACTTACTGTCTTGGTCTACTGCTTTCGCATTTTGCC
TGGTAAACTGGTTCAAATACTGGCTGTTGTCTGTAACAACTACCTGTTACTGATGTTGTACAGG
TCATCTCATCCCTTACTGCCTCCCTGAGGTTCGATGGTGCTCTGAACGTGGATGTTAACGAGTT
CCAGACCAACCTGGTACCCTACCCGAGGATCCACTTCATGCTTTCTTCGTACGCTCCAGTCATC
TCTGCTGAGAAGGCCTACCACGAGCAGCTCTCTGTGGCTGAGATCACCAACAGTGCCTTCGAGC
CATCTTCCATGATGGCCAAGTGCGACCCACGCCATGGCAAGTACATGGCCTGCTGCCTCATGTA
CCGTGGTGATGTGGTCCCCAAGGATGTGAATGCTGCTGTGGCCACCATCAAGACCAAACGCACC
ATCCAGTTCGTGGATTGGTGCCCGACTGGCTTCAAGTGCGGCATCAACTACCAGCCTCCTAGCG
TTGTGCCTGGTGGCGACCTGGCCAAGGTGCAGCGTGCCGTGTGCATGATCTCCAACTCCACCAG
TGTTGTGGAGGTGTTCTCCCGCATCGACCACAAGTTCGACCTCATGTACGCCAAGCGTGCCTTC
GTGCACTGGTACGTCGGTGAGGGTATGGAGGAAGGTGAGTTCTCTGAGGCCCGTGAGGACCTGG
CGGCGCTCGAGAAGGACTACGAGGAGGTCGGTGCTGAGTTCGATGAGGGCGAGGATGGCGACGA
GGGTGACGAGTACTAGAGAAGTTTGCTGATGACGCAGCATCAGGCCAGTGTGCTGCCCTTATCC
CGTGATCTGCCGAGAGTTGCTC
Conservation Information
Conserved circRNAs NA
PMCS 0.044094517
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018