Detail information of Zm00001d033850_circ_g.5


General Information
CircRNA Name Zm00001d033850_circ_g.5
ID in PlantcircBase zma_circ_003693
Alias ovule_test_circ_005293
Organism Zea mays
Position chr1: 275841904-275845748  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d033850
Parent gene annotation alpha tubulin1
Parent gene strand +
Alternative splicing Zm00001d033850_circ_g.1 Zm00001d033850_circ_g.2 Zm00001d033850_circ_g.3 Zm00001d033850_circ_g.4 Zm00001d033850_circ_g.6 Zm00001d033850_circ_g.7 Zm00001d033850_circ_g.8 Zm00001d033850_circ_g.9 Zm00001d033850_circ_g.10 Zm00001d033850_circ_g.11 Zm00001d033850_circ_g.12 Zm00001d033850_circ_g.13 Zm00001d033850_circ_g.14 Zm00001d033850_circ_g.15 Zm00001d033850_circ_g.16 Zm00001d033850_circ_g.17 Zm00001d033850_circ_g.18 Zm00001d033850_circ_g.19 Zm00001d033850_circ_g.20 Zm00001d033850_circ_g.21
Support reads NA
Tissues ovule
Exon boundary   No-No
Splicing signals   GT-GA
Number of exons covered Zm00001d033850_T021:2
Zm00001d033850_T018:2
Zm00001d033850_T002:3
Zm00001d033850_T014:3
Zm00001d033850_T013:3
Zm00001d033850_T006:2
Zm00001d033850_T005:1
Zm00001d033850_T009:4
Zm00001d033850_T001:3
Zm00001d033850_T007:2
Zm00001d033850_T010:3
Zm00001d033850_T008:1
Zm00001d033850_T017:2
Zm00001d033850_T004:2
Zm00001d033850_T003:3
Zm00001d033850_T015:2
Zm00001d033850_T019:2
Zm00001d033850_T023:2
Zm00001d033850_T016:1
Zm00001d033850_T020:2
Zm00001d033850_T022:2
Zm00001d033850_T011:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGTGATGATGCTTTCAACACCTTCTTCAGTGAGACTGGTGCTGGGAAGCACGTGCCCCGTGCT
GTTTTTGTTGACCTTGAACCCACTGTCATCGATGAGggtgaggactggcacctaccgccagctc
ttccaccctgagcagcttatcagtggcaaggaggatgcagccaacaacttcgcccgtggtcact
acaccagt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTGAGGACTGGCACCTACCGCCAGCTCTTCCACCCTGAGCAGCTTATCAGTGGCAAGGAGGAT
GCAGCCAACAACTTCGCCCGTGGTCACTACACCAGTAAGTAACCTGATCTGACTGTCAGTTTAC
AATGCTCCTGGATATTTGCTTTGTAATGAACATCTTATTTAAACTTGATTGCTTGTCTTGCAGT
TGGCAAGGAGATTGTTGACCTGTGCCTTGATCGCATCAGGAAGCTTGCCGACAACTGCACTGGT
CTCCAGGGCTTCCTCGTCTTCAACGCTGTTGGCGGAGGAACAGGCTCTGGCCTTGGTTCCCTCC
TCCTGGAGCGTCTGTCTGTTGACTACGGCAAGAAGTCTAAGCTTGGTTTCACTGTGTACCCATC
CCCCCAAGTTTCGACCTCAGTGGTTGAGCCATACAACAGTGTCCTGTCCACCCACTCCCTCCTT
GAGCACACTGATGTGGCTATCCTGCTGGACAACGAGGCCATCTATGACATCTGCCGCCGTTCCC
TTGACATTGAGCGCCCAACCTACACCAACCTCAACAGGCTTGTGTCCCAGGTACTGTCTTGGTT
TACAGCCTAAGCATTAAGTAAATGGTCTGTAATCTGGGCTTTTCTCTTTAACCATCAGTTGTTC
CTGTCGTTGTACAGGTCATCTCATCCCTGACTGCCTCCCTGAGGTTCGATGGTGCTCTTAACGT
GGATGTGAATGAGTTCCAGACCAACTTGGTGCCCTACCCGAGGATCCACTTCATGCTTTCCTCC
TATGCTCCAGTCATCTCTGCTGAGAAGGCCTACCACGAGCAGCTGTCTGTGGCCGAGATCACCA
ACAGCGCCTTCGAGCCATCCTCCATGATGGCCAAGTGCGATCCCCGCCATGGTAAGTACATGGC
CTGCTGCCTCATGTACCGTGGTGATGTGGTCCCCAAGGATGTGAATGCTGCTGTGGCCACCATC
AAGACCAAGCGCACCATCCAGTTTGTGGACTGGTGCCCAACTGGCTTTAAGTGCGGCATTAACT
ACCAGCCTCCAAGTGTGGTGCCTGGTGGTGACCTGGCCAAGGTGCAGCGCGCTGTGTGCATGAT
CTCCAACTCCACCAGTGTTGTGGAGGTGTTCTCCCGCATCGACCACAAGTTCGACCTCATGTAC
GCCAAGCGTGCCTTCGTGCACTGGTATGTCGGTGAGGGTATGGAGGAGGGCGAGTTCTCTGAGG
CCCGTGAGGATCTGGCAGCGCTCGAGAAGGACTACGAGGAGGTTGGTGCTGAGTTTGATGAGGG
TGAGGAAGGTGATGATGGTGATGAGTACTAGAAGTATCCTGATGCGGTCATCGTCAGGCTTGTG
TGCTGCTCTTGTCCCCGTTGTGGTTTGCAACACCTGATGTTGTAAGACTTTCTGGTTATGTCCG
CCCCGCTGTGCCACTGGGTTATTAAGAACGTCGTTATGGATGGTTGTCTACACTACATTATTGC
TTCTCGATATTGGAAAACTGTTATGCGCCTCGGTGGATTGTGTTGTTGTCGTAATGTCATCACT
CATACGCCGCTGGGAATTTTGAGGCCTGTCAAGCATCAGGATTGCGTTATGAGTTAAATGCTTC
AGCGACGTTTAAACTTGTCTAAGGTGCCATCTAGATCATGAACTTGTCAAGGGTTGCCACTTAG
ATCATGAACTTCGTAAATATGTTTTTGGATCCAAAATATGTTTTTGATCCTTAAGGGTGTGTTT
GGTTGAATGTATAAGAAGGGATGAAAGAGGAATGTCATAATTTCTATAGTGTTTGGTTGAGAGA
CAAGTGAGGACGAGATAAATACCTAAGAAGGGATGAAAGAGGAATGCCACAATTTCTATAGTGT
TTGGTTCAGAGACAAGTGACAATTTCTATAGTGTTTGGTTGAGAGACAAGTGAGGGCGAGTAAA
TACCGCAATAATTTTTTGGTGGCACCGAATTTTTGTGAAGTTGTATACATTTTGGACACCAATA
GAAAATAGAATTAAAAAAATATAAAACTGGTGTCATTTAAATCAGTGTCACGTTATTAAAATTT
AAAACTATCAACTAAAATTGTCTAATGGATTATTTATGTGGTTTTGTAAAGTTGTGGAGATTAA
ACAACCAGTTTTGAAGATAAGTAAGTGAAATAGTCAAATATAAAACTAGGTTAAGAATTTAGGT
ACACTTACGACTAGTTTAGATGCCGCAAAATGGGTTAAATTTTTCTTCTTATTCAAAATTAAAT
AATAAGGTGAATTTAACTACTCTAATTTCCTCTGTTTTTTTAACTCCCAAACTATCCCTTATTC
GTAATAATAGGAAGCGGTGACAGTTTGGTGGTGAGAACTCAGGTATCAACAAAAAGAAATGTAT
TTTTGAAATATTTTGCTCGTAATGCCCTGCAAGGTTTCGATTTCCGTAGCCAGTACATGTCCGC
TCTTGACCCAGGTACTGTGTCACGAACCAACCGACCGTTGAACGGACGTGGAGCACGAACCATT
AAAACAATCAAAATCTCAGGGGCTCAAACGAAAAAACACCGCCCCCTTCCCTCGCTTGCGCTGG
CACTCCATCGTGGGCTCGTGGCCCAGGCTGTCGTTCTGTTCTATAAAGCGAGACGAGTGGGAGC
AGGCGTAACCCTAATTGAGCATCGCAGAGATAGGCGTCTTCGTACTCGCCTACCTCCGCGGCTC
AAACCTTTCCCCCTTCTCCCAATTCCTTCCGCCGGCCGCCGCTCCACCCGTACGACGACACCAT
GAGGGAGTGCATTTCGATCCACATCGGCCAGGCCGGTATCCAGGTCGGAAACGCGTGCTGGGAG
CTGTACTGCCTTGAGCATGGCATTCAGGTAACGATCCGTCATTCCCTCCCCCGTTCTCCCTCTG
TTGAGGTAGATCTATAATCGGTATGGGGGTTTCATCGCTAATATTTGCTGGATTTTTGGTGGGG
CTGAATCCGCCGGAGGAAATGACGTTTCAAATCGGTAGATCTGTACGGATCTGGATGCATGTAA
TGGTGGCTACCCGGATCCGGGTTTGCTAGGTCTGATCCGGAGAACTGGTGTCTGAGCGAGATTG
CAATTGTTTTTGAACTGGAATTTTGATACGTAGAATTTGAATAGGGATCACCCGAAACCCACGT
GCGTGGTAGATCTGAGTGCCCAGAATTCGTTTAAATGTACTGTCAGTTTGGATCTTTGAATTTT
CATAGGCTAAGTTCCGTATTGCCTGTTGATATGTGAGCCTTGATGTACAAATACAGACTATAGT
ATGTTTAGTGTTAATTTGATGTGAGCCTTGATGAATTTTCACAGGCTAAGTTCCATGCCCACAA
TGCATCCATTCATACTGTTATTAATTCTGTAAAAAAAACGAATACACGTCACTCTTAGGCACCT
TAACCCAATTTGCATTTTTCTGTTTAAATCTGTTAGAAATGGGATAGAGACTGGCATGTTGTTA
TGTAGTCCTAGCTGTTATTAGCTTTATCTAGGACTAAATGCTGTTCACATATTTCAAGTGTTTG
CAATCGGAGATTCAATCATGGCTCCCTAGGACATTTGAATCGTGTGTCATAGTTTGAAATATGA
GATTCAGGCCTGTGTTACCTTAAGATCATGCATCTGTCTGGTCTACTACTGTAGATGGCATGTA
TTTTTTACATAGACTCCTTAAGTCGCATATTAACACTACTACATTTGTGTTTTGTTCAGGCTGA
CGGTCAGATGCCCGGTGACAAGACCATTGGGGGAGGTGATGATGCTTTCAACACCTTCTTCAGT
GAGACTGGTGCTGGGAAGCACGTGCCCCGTGCTGTTTTTGTTGACCTTGAACCCACTGTCATCG
ATGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.13355134
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018