Detail information of Zm00001d033850_circ_g.10


General Information
CircRNA Name Zm00001d033850_circ_g.10
ID in PlantcircBase zma_circ_006916
Alias Zm01circ00174, zma_circ_0000533
Organism Zea mays
Position chr1: 275842558-275846309  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRI2, find_circ
Parent gene Zm00001d033850
Parent gene annotation alpha tubulin1
Parent gene strand +
Alternative splicing Zm00001d033850_circ_g.1 Zm00001d033850_circ_g.2 Zm00001d033850_circ_g.3 Zm00001d033850_circ_g.4 Zm00001d033850_circ_g.5 Zm00001d033850_circ_g.6 Zm00001d033850_circ_g.7 Zm00001d033850_circ_g.8 Zm00001d033850_circ_g.9 Zm00001d033850_circ_g.11 Zm00001d033850_circ_g.12 Zm00001d033850_circ_g.13 Zm00001d033850_circ_g.14 Zm00001d033850_circ_g.15 Zm00001d033850_circ_g.16 Zm00001d033850_circ_g.17 Zm00001d033850_circ_g.18 Zm00001d033850_circ_g.19 Zm00001d033850_circ_g.20 Zm00001d033850_circ_g.21
Support reads NA
Tissues leaf, endosperm, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d033850_T021:3
Zm00001d033850_T023:3
Zm00001d033850_T017:3
Zm00001d033850_T008:2
Zm00001d033850_T010:1
Zm00001d033850_T014:1
Zm00001d033850_T019:3
Zm00001d033850_T005:1
Zm00001d033850_T015:1
Zm00001d033850_T007:3
Zm00001d033850_T003:1
Zm00001d033850_T018:3
Zm00001d033850_T013:1
Zm00001d033850_T006:3
Zm00001d033850_T011:1
Zm00001d033850_T016:1
Zm00001d033850_T004:3
Zm00001d033850_T024:1
Zm00001d033850_T022:3
Zm00001d033850_T020:3
Zm00001d033850_T009:2
Zm00001d033850_T002:1
Zm00001d033850_T001:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGCTATACTGCTGGACAATGAGGCCATCTACGACATCTGCCGCCGATCCCTTGACATTGAGCGC
CCAACCTACACCAACCTCAACAGGCTTGTGTCCCAGgtcatctcatccctgactgcctccctga
ggttcgatggtgctcttaacgtggatgtgaatgagttccagaccaacttggtgccctacccgag
gatccact
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCATCTCATCCCTGACTGCCTCCCTGAGGTTCGATGGTGCTCTTAACGTGGATGTGAATGAGT
TCCAGACCAACTTGGTGCCCTACCCGAGGATCCACTTCATGCTTTCCTCCTATGCTCCAGTCAT
CTCTGCTGAGAAGGCCTACCACGAGCAGCTGTCTGTGGCCGAGATCACCAACAGCGCCTTCGAG
CCATCCTCCATGATGGCCAAGTGCGATCCCCGCCATGGTAAGTACATGGCCTGCTGCCTCATGT
ACCGTGGTGATGTGGTCCCCAAGGATGTGAATGCTGCTGTGGCCACCATCAAGACCAAGCGCAC
CATCCAGTTTGTGGACTGGTGCCCAACTGGCTTTAAGTGCGGCATTAACTACCAGCCTCCAAGT
GTGGTGCCTGGTGGTGACCTGGCCAAGGTGCAGCGCGCTGTGTGCATGATCTCCAACTCCACCA
GTGTTGTGGAGGTGTTCTCCCGCATCGACCACAAGTTCGACCTCATGTACGCCAAGCGTGCCTT
CGTGCACTGGTATGTCGGTGAGGGTATGGAGGAGGGCGAGTTCTCTGAGGCCCGTGAGGATCTG
GCAGCGCTCGAGAAGGACTACGAGGAGGTTGGTGCTGAGTTTGATGAGGGTGAGGAAGGTGATG
ATGGTGATGAGTACTAGAAGTATCCTGATGCGGTCATCGTCAGGCTTGTGTGCTGCTCTTGTCC
CCGTTGTGGTTTGCAACACCTGATGTTGTAAGACTTTCTGGTTATGTCCGCCCCGCTGTGCCAC
TGGGTTATTAAGAACGTCGTTATGGATGGTTGTCTACACTACATTATTGCTTCTCGATATTGGA
AAACTGTTATGCGCCTCGGTGGATTGTGTTGTTGTCGTAATGTCATCACTCATACGCCGCTGGG
AATTTTGAGGCCTGTCAAGCATCAGGATTGCGTTATGAGTTAAATGCTTCAGCGACGTTTAAAC
TTGTCTAAGGTGCCATCTAGATCATGAACTTGTCAAGGGTTGCCACTTAGATCATGAACTTCGT
AAATATGTTTTTGGATCCAAAATATGTTTTTGATCCTTAAGGGTGTGTTTGGTTGAATGTATAA
GAAGGGATGAAAGAGGAATGTCATAATTTCTATAGTGTTTGGTTGAGAGACAAGTGAGGACGAG
ATAAATACCTAAGAAGGGATGAAAGAGGAATGCCACAATTTCTATAGTGTTTGGTTCAGAGACA
AGTGACAATTTCTATAGTGTTTGGTTGAGAGACAAGTGAGGGCGAGTAAATACCGCAATAATTT
TTTGGTGGCACCGAATTTTTGTGAAGTTGTATACATTTTGGACACCAATAGAAAATAGAATTAA
AAAAATATAAAACTGGTGTCATTTAAATCAGTGTCACGTTATTAAAATTTAAAACTATCAACTA
AAATTGTCTAATGGATTATTTATGTGGTTTTGTAAAGTTGTGGAGATTAAACAACCAGTTTTGA
AGATAAGTAAGTGAAATAGTCAAATATAAAACTAGGTTAAGAATTTAGGTACACTTACGACTAG
TTTAGATGCCGCAAAATGGGTTAAATTTTTCTTCTTATTCAAAATTAAATAATAAGGTGAATTT
AACTACTCTAATTTCCTCTGTTTTTTTAACTCCCAAACTATCCCTTATTCGTAATAATAGGAAG
CGGTGACAGTTTGGTGGTGAGAACTCAGGTATCAACAAAAAGAAATGTATTTTTGAAATATTTT
GCTCGTAATGCCCTGCAAGGTTTCGATTTCCGTAGCCAGTACATGTCCGCTCTTGACCCAGGTA
CTGTGTCACGAACCAACCGACCGTTGAACGGACGTGGAGCACGAACCATTAAAACAATCAAAAT
CTCAGGGGCTCAAACGAAAAAACACCGCCCCCTTCCCTCGCTTGCGCTGGCACTCCATCGTGGG
CTCGTGGCCCAGGCTGTCGTTCTGTTCTATAAAGCGAGACGAGTGGGAGCAGGCGTAACCCTAA
TTGAGCATCGCAGAGATAGGCGTCTTCGTACTCGCCTACCTCCGCGGCTCAAACCTTTCCCCCT
TCTCCCAATTCCTTCCGCCGGCCGCCGCTCCACCCGTACGACGACACCATGAGGGAGTGCATTT
CGATCCACATCGGCCAGGCCGGTATCCAGGTCGGAAACGCGTGCTGGGAGCTGTACTGCCTTGA
GCATGGCATTCAGGTAACGATCCGTCATTCCCTCCCCCGTTCTCCCTCTGTTGAGGTAGATCTA
TAATCGGTATGGGGGTTTCATCGCTAATATTTGCTGGATTTTTGGTGGGGCTGAATCCGCCGGA
GGAAATGACGTTTCAAATCGGTAGATCTGTACGGATCTGGATGCATGTAATGGTGGCTACCCGG
ATCCGGGTTTGCTAGGTCTGATCCGGAGAACTGGTGTCTGAGCGAGATTGCAATTGTTTTTGAA
CTGGAATTTTGATACGTAGAATTTGAATAGGGATCACCCGAAACCCACGTGCGTGGTAGATCTG
AGTGCCCAGAATTCGTTTAAATGTACTGTCAGTTTGGATCTTTGAATTTTCATAGGCTAAGTTC
CGTATTGCCTGTTGATATGTGAGCCTTGATGTACAAATACAGACTATAGTATGTTTAGTGTTAA
TTTGATGTGAGCCTTGATGAATTTTCACAGGCTAAGTTCCATGCCCACAATGCATCCATTCATA
CTGTTATTAATTCTGTAAAAAAAACGAATACACGTCACTCTTAGGCACCTTAACCCAATTTGCA
TTTTTCTGTTTAAATCTGTTAGAAATGGGATAGAGACTGGCATGTTGTTATGTAGTCCTAGCTG
TTATTAGCTTTATCTAGGACTAAATGCTGTTCACATATTTCAAGTGTTTGCAATCGGAGATTCA
ATCATGGCTCCCTAGGACATTTGAATCGTGTGTCATAGTTTGAAATATGAGATTCAGGCCTGTG
TTACCTTAAGATCATGCATCTGTCTGGTCTACTACTGTAGATGGCATGTATTTTTTACATAGAC
TCCTTAAGTCGCATATTAACACTACTACATTTGTGTTTTGTTCAGGCTGACGGTCAGATGCCCG
GTGACAAGACCATTGGGGGAGGTGATGATGCTTTCAACACCTTCTTCAGTGAGACTGGTGCTGG
GAAGCACGTGCCCCGTGCTGTTTTTGTTGACCTTGAACCCACTGTCATCGATGAGGTGAGAACT
GGCACCTACCGCCAGCTCTTCCACCCTGAGCAGCTCATCAGTGGGAAGGAGGATGCAGCCAACA
ACTTTGCCCGTGGTCACTACACCAGTAAGTAATCTGATCTGAGCGTCAGTTTTCACTGCTCCTT
GATATTTGCTCTGTAATGAACATCTCATTTAAACCTGATTCCTTGTTTTGCAGTTGGCAAGGAG
ATTGTTGACCTGTGCCTTGATCGCATCAGGAAGCTTGCCGACAACTGCACTGGTCTCCAGGGCT
TCCTCGTCTTCAACGCTGTTGGTGGAGGAACGGGCTCTGGCCTTGGTTCCCTCCTCCTAGAGCG
CCTGTCTGTTGACTACGGCAAGAAATCCAAGCTTGGGTTCACTGTGTACCCTTCCCCCCAAGTT
TCTACTTCGGTAGTTGAGCCATACAACAGTGTACTGTCCACCCACTCCCTCCTCGAGCACACTG
ATGTGGCTATACTGCTGGACAATGAGGCCATCTACGACATCTGCCGCCGATCCCTTGACATTGA
GCGCCCAACCTACACCAACCTCAACAGGCTTGTGTCCCAG
Conservation Information
Conserved circRNAs NA
PMCS 1.043824265
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Han et al., 2020; Ma et al., 2021b