Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d033850_circ_g.10 |
| ID in PlantcircBase | zma_circ_006916 |
| Alias | Zm01circ00174, zma_circ_0000533 |
| Organism | Zea mays |
| Position | chr1: 275842558-275846309 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | u-circRNA |
| Identification method | CIRI2, find_circ |
| Parent gene | Zm00001d033850 |
| Parent gene annotation |
alpha tubulin1 |
| Parent gene strand | + |
| Alternative splicing | Zm00001d033850_circ_g.1 Zm00001d033850_circ_g.2 Zm00001d033850_circ_g.3 Zm00001d033850_circ_g.4 Zm00001d033850_circ_g.5 Zm00001d033850_circ_g.6 Zm00001d033850_circ_g.7 Zm00001d033850_circ_g.8 Zm00001d033850_circ_g.9 Zm00001d033850_circ_g.11 Zm00001d033850_circ_g.12 Zm00001d033850_circ_g.13 Zm00001d033850_circ_g.14 Zm00001d033850_circ_g.15 Zm00001d033850_circ_g.16 Zm00001d033850_circ_g.17 Zm00001d033850_circ_g.18 Zm00001d033850_circ_g.19 Zm00001d033850_circ_g.20 Zm00001d033850_circ_g.21 |
| Support reads | NA |
| Tissues | leaf, endosperm, root |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Zm00001d033850_T021:3 Zm00001d033850_T023:3 Zm00001d033850_T017:3 Zm00001d033850_T008:2 Zm00001d033850_T010:1 Zm00001d033850_T014:1 Zm00001d033850_T019:3 Zm00001d033850_T005:1 Zm00001d033850_T015:1 Zm00001d033850_T007:3 Zm00001d033850_T003:1 Zm00001d033850_T018:3 Zm00001d033850_T013:1 Zm00001d033850_T006:3 Zm00001d033850_T011:1 Zm00001d033850_T016:1 Zm00001d033850_T004:3 Zm00001d033850_T024:1 Zm00001d033850_T022:3 Zm00001d033850_T020:3 Zm00001d033850_T009:2 Zm00001d033850_T002:1 Zm00001d033850_T001:1 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 1.043824265 |
| Functional Information | |
|---|---|
| Coding potential | N |
| Potential coding position |
NA |
| Potential amino acid sequence |
NA |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Han et al., 2020; Ma et al., 2021b |