Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Zm00001d033850_circ_g.10 |
ID in PlantcircBase | zma_circ_006916 |
Alias | Zm01circ00174, zma_circ_0000533 |
Organism | Zea mays |
Position | chr1: 275842558-275846309 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2, find_circ |
Parent gene | Zm00001d033850 |
Parent gene annotation |
alpha tubulin1 |
Parent gene strand | + |
Alternative splicing | Zm00001d033850_circ_g.1 Zm00001d033850_circ_g.2 Zm00001d033850_circ_g.3 Zm00001d033850_circ_g.4 Zm00001d033850_circ_g.5 Zm00001d033850_circ_g.6 Zm00001d033850_circ_g.7 Zm00001d033850_circ_g.8 Zm00001d033850_circ_g.9 Zm00001d033850_circ_g.11 Zm00001d033850_circ_g.12 Zm00001d033850_circ_g.13 Zm00001d033850_circ_g.14 Zm00001d033850_circ_g.15 Zm00001d033850_circ_g.16 Zm00001d033850_circ_g.17 Zm00001d033850_circ_g.18 Zm00001d033850_circ_g.19 Zm00001d033850_circ_g.20 Zm00001d033850_circ_g.21 |
Support reads | NA |
Tissues | leaf, endosperm, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d033850_T021:3 Zm00001d033850_T023:3 Zm00001d033850_T017:3 Zm00001d033850_T008:2 Zm00001d033850_T010:1 Zm00001d033850_T014:1 Zm00001d033850_T019:3 Zm00001d033850_T005:1 Zm00001d033850_T015:1 Zm00001d033850_T007:3 Zm00001d033850_T003:1 Zm00001d033850_T018:3 Zm00001d033850_T013:1 Zm00001d033850_T006:3 Zm00001d033850_T011:1 Zm00001d033850_T016:1 Zm00001d033850_T004:3 Zm00001d033850_T024:1 Zm00001d033850_T022:3 Zm00001d033850_T020:3 Zm00001d033850_T009:2 Zm00001d033850_T002:1 Zm00001d033850_T001:1 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 1.043824265 |
Functional Information | |
---|---|
Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Han et al., 2020; Ma et al., 2021b |