Detail information of Zm00001d033850_circ_g.7


General Information
CircRNA Name Zm00001d033850_circ_g.7
ID in PlantcircBase zma_circ_003694
Alias ovule_test_circ_002796
Organism Zea mays
Position chr1: 275841918-275845762  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d033850
Parent gene annotation alpha tubulin1
Parent gene strand +
Alternative splicing Zm00001d033850_circ_g.1 Zm00001d033850_circ_g.2 Zm00001d033850_circ_g.3 Zm00001d033850_circ_g.4 Zm00001d033850_circ_g.5 Zm00001d033850_circ_g.6 Zm00001d033850_circ_g.8 Zm00001d033850_circ_g.9 Zm00001d033850_circ_g.10 Zm00001d033850_circ_g.11 Zm00001d033850_circ_g.12 Zm00001d033850_circ_g.13 Zm00001d033850_circ_g.14 Zm00001d033850_circ_g.15 Zm00001d033850_circ_g.16 Zm00001d033850_circ_g.17 Zm00001d033850_circ_g.18 Zm00001d033850_circ_g.19 Zm00001d033850_circ_g.20 Zm00001d033850_circ_g.21
Support reads NA
Tissues ovule
Exon boundary   No-No
Splicing signals   CT-CA
Number of exons covered Zm00001d033850_T004:2
Zm00001d033850_T013:3
Zm00001d033850_T002:3
Zm00001d033850_T019:2
Zm00001d033850_T009:4
Zm00001d033850_T001:3
Zm00001d033850_T011:3
Zm00001d033850_T018:2
Zm00001d033850_T015:2
Zm00001d033850_T017:2
Zm00001d033850_T007:2
Zm00001d033850_T006:2
Zm00001d033850_T010:3
Zm00001d033850_T016:1
Zm00001d033850_T014:3
Zm00001d033850_T008:1
Zm00001d033850_T023:2
Zm00001d033850_T020:2
Zm00001d033850_T022:2
Zm00001d033850_T003:3
Zm00001d033850_T021:2
Zm00001d033850_T005:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCAACACCTTCTTCAGTGAGACTGGTGCTGGGAAGCACGTGCCCCGTGCTGTTTTTGTTGACCT
TGAACCCACTGTCATCGATGAGGTGAGAACTGGCACcctaccgccagctcttccaccctgagca
gcttatcagtggcaaggaggatgcagccaacaacttcgcccgtggtcactacaccagtaagtaa
cctgatct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTACCGCCAGCTCTTCCACCCTGAGCAGCTTATCAGTGGCAAGGAGGATGCAGCCAACAACTT
CGCCCGTGGTCACTACACCAGTAAGTAACCTGATCTGACTGTCAGTTTACAATGCTCCTGGATA
TTTGCTTTGTAATGAACATCTTATTTAAACTTGATTGCTTGTCTTGCAGTTGGCAAGGAGATTG
TTGACCTGTGCCTTGATCGCATCAGGAAGCTTGCCGACAACTGCACTGGTCTCCAGGGCTTCCT
CGTCTTCAACGCTGTTGGCGGAGGAACAGGCTCTGGCCTTGGTTCCCTCCTCCTGGAGCGTCTG
TCTGTTGACTACGGCAAGAAGTCTAAGCTTGGTTTCACTGTGTACCCATCCCCCCAAGTTTCGA
CCTCAGTGGTTGAGCCATACAACAGTGTCCTGTCCACCCACTCCCTCCTTGAGCACACTGATGT
GGCTATCCTGCTGGACAACGAGGCCATCTATGACATCTGCCGCCGTTCCCTTGACATTGAGCGC
CCAACCTACACCAACCTCAACAGGCTTGTGTCCCAGGTACTGTCTTGGTTTACAGCCTAAGCAT
TAAGTAAATGGTCTGTAATCTGGGCTTTTCTCTTTAACCATCAGTTGTTCCTGTCGTTGTACAG
GTCATCTCATCCCTGACTGCCTCCCTGAGGTTCGATGGTGCTCTTAACGTGGATGTGAATGAGT
TCCAGACCAACTTGGTGCCCTACCCGAGGATCCACTTCATGCTTTCCTCCTATGCTCCAGTCAT
CTCTGCTGAGAAGGCCTACCACGAGCAGCTGTCTGTGGCCGAGATCACCAACAGCGCCTTCGAG
CCATCCTCCATGATGGCCAAGTGCGATCCCCGCCATGGTAAGTACATGGCCTGCTGCCTCATGT
ACCGTGGTGATGTGGTCCCCAAGGATGTGAATGCTGCTGTGGCCACCATCAAGACCAAGCGCAC
CATCCAGTTTGTGGACTGGTGCCCAACTGGCTTTAAGTGCGGCATTAACTACCAGCCTCCAAGT
GTGGTGCCTGGTGGTGACCTGGCCAAGGTGCAGCGCGCTGTGTGCATGATCTCCAACTCCACCA
GTGTTGTGGAGGTGTTCTCCCGCATCGACCACAAGTTCGACCTCATGTACGCCAAGCGTGCCTT
CGTGCACTGGTATGTCGGTGAGGGTATGGAGGAGGGCGAGTTCTCTGAGGCCCGTGAGGATCTG
GCAGCGCTCGAGAAGGACTACGAGGAGGTTGGTGCTGAGTTTGATGAGGGTGAGGAAGGTGATG
ATGGTGATGAGTACTAGAAGTATCCTGATGCGGTCATCGTCAGGCTTGTGTGCTGCTCTTGTCC
CCGTTGTGGTTTGCAACACCTGATGTTGTAAGACTTTCTGGTTATGTCCGCCCCGCTGTGCCAC
TGGGTTATTAAGAACGTCGTTATGGATGGTTGTCTACACTACATTATTGCTTCTCGATATTGGA
AAACTGTTATGCGCCTCGGTGGATTGTGTTGTTGTCGTAATGTCATCACTCATACGCCGCTGGG
AATTTTGAGGCCTGTCAAGCATCAGGATTGCGTTATGAGTTAAATGCTTCAGCGACGTTTAAAC
TTGTCTAAGGTGCCATCTAGATCATGAACTTGTCAAGGGTTGCCACTTAGATCATGAACTTCGT
AAATATGTTTTTGGATCCAAAATATGTTTTTGATCCTTAAGGGTGTGTTTGGTTGAATGTATAA
GAAGGGATGAAAGAGGAATGTCATAATTTCTATAGTGTTTGGTTGAGAGACAAGTGAGGACGAG
ATAAATACCTAAGAAGGGATGAAAGAGGAATGCCACAATTTCTATAGTGTTTGGTTCAGAGACA
AGTGACAATTTCTATAGTGTTTGGTTGAGAGACAAGTGAGGGCGAGTAAATACCGCAATAATTT
TTTGGTGGCACCGAATTTTTGTGAAGTTGTATACATTTTGGACACCAATAGAAAATAGAATTAA
AAAAATATAAAACTGGTGTCATTTAAATCAGTGTCACGTTATTAAAATTTAAAACTATCAACTA
AAATTGTCTAATGGATTATTTATGTGGTTTTGTAAAGTTGTGGAGATTAAACAACCAGTTTTGA
AGATAAGTAAGTGAAATAGTCAAATATAAAACTAGGTTAAGAATTTAGGTACACTTACGACTAG
TTTAGATGCCGCAAAATGGGTTAAATTTTTCTTCTTATTCAAAATTAAATAATAAGGTGAATTT
AACTACTCTAATTTCCTCTGTTTTTTTAACTCCCAAACTATCCCTTATTCGTAATAATAGGAAG
CGGTGACAGTTTGGTGGTGAGAACTCAGGTATCAACAAAAAGAAATGTATTTTTGAAATATTTT
GCTCGTAATGCCCTGCAAGGTTTCGATTTCCGTAGCCAGTACATGTCCGCTCTTGACCCAGGTA
CTGTGTCACGAACCAACCGACCGTTGAACGGACGTGGAGCACGAACCATTAAAACAATCAAAAT
CTCAGGGGCTCAAACGAAAAAACACCGCCCCCTTCCCTCGCTTGCGCTGGCACTCCATCGTGGG
CTCGTGGCCCAGGCTGTCGTTCTGTTCTATAAAGCGAGACGAGTGGGAGCAGGCGTAACCCTAA
TTGAGCATCGCAGAGATAGGCGTCTTCGTACTCGCCTACCTCCGCGGCTCAAACCTTTCCCCCT
TCTCCCAATTCCTTCCGCCGGCCGCCGCTCCACCCGTACGACGACACCATGAGGGAGTGCATTT
CGATCCACATCGGCCAGGCCGGTATCCAGGTCGGAAACGCGTGCTGGGAGCTGTACTGCCTTGA
GCATGGCATTCAGGTAACGATCCGTCATTCCCTCCCCCGTTCTCCCTCTGTTGAGGTAGATCTA
TAATCGGTATGGGGGTTTCATCGCTAATATTTGCTGGATTTTTGGTGGGGCTGAATCCGCCGGA
GGAAATGACGTTTCAAATCGGTAGATCTGTACGGATCTGGATGCATGTAATGGTGGCTACCCGG
ATCCGGGTTTGCTAGGTCTGATCCGGAGAACTGGTGTCTGAGCGAGATTGCAATTGTTTTTGAA
CTGGAATTTTGATACGTAGAATTTGAATAGGGATCACCCGAAACCCACGTGCGTGGTAGATCTG
AGTGCCCAGAATTCGTTTAAATGTACTGTCAGTTTGGATCTTTGAATTTTCATAGGCTAAGTTC
CGTATTGCCTGTTGATATGTGAGCCTTGATGTACAAATACAGACTATAGTATGTTTAGTGTTAA
TTTGATGTGAGCCTTGATGAATTTTCACAGGCTAAGTTCCATGCCCACAATGCATCCATTCATA
CTGTTATTAATTCTGTAAAAAAAACGAATACACGTCACTCTTAGGCACCTTAACCCAATTTGCA
TTTTTCTGTTTAAATCTGTTAGAAATGGGATAGAGACTGGCATGTTGTTATGTAGTCCTAGCTG
TTATTAGCTTTATCTAGGACTAAATGCTGTTCACATATTTCAAGTGTTTGCAATCGGAGATTCA
ATCATGGCTCCCTAGGACATTTGAATCGTGTGTCATAGTTTGAAATATGAGATTCAGGCCTGTG
TTACCTTAAGATCATGCATCTGTCTGGTCTACTACTGTAGATGGCATGTATTTTTTACATAGAC
TCCTTAAGTCGCATATTAACACTACTACATTTGTGTTTTGTTCAGGCTGACGGTCAGATGCCCG
GTGACAAGACCATTGGGGGAGGTGATGATGCTTTCAACACCTTCTTCAGTGAGACTGGTGCTGG
GAAGCACGTGCCCCGTGCTGTTTTTGTTGACCTTGAACCCACTGTCATCGATGAGGTGAGAACT
GGCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.251362333
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018