Detail information of Zm00001d033850_circ_g.13


General Information
CircRNA Name Zm00001d033850_circ_g.13
ID in PlantcircBase zma_circ_003698
Alias pollen_test_circ_001016
Organism Zea mays
Position chr1: 275842586-275847028  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d033850
Parent gene annotation alpha tubulin1
Parent gene strand +
Alternative splicing Zm00001d033850_circ_g.1 Zm00001d033850_circ_g.2 Zm00001d033850_circ_g.3 Zm00001d033850_circ_g.4 Zm00001d033850_circ_g.5 Zm00001d033850_circ_g.6 Zm00001d033850_circ_g.7 Zm00001d033850_circ_g.8 Zm00001d033850_circ_g.9 Zm00001d033850_circ_g.10 Zm00001d033850_circ_g.11 Zm00001d033850_circ_g.12 Zm00001d033850_circ_g.14 Zm00001d033850_circ_g.15 Zm00001d033850_circ_g.16 Zm00001d033850_circ_g.17 Zm00001d033850_circ_g.18 Zm00001d033850_circ_g.19 Zm00001d033850_circ_g.20 Zm00001d033850_circ_g.21
Support reads NA
Tissues pollen
Exon boundary   No-No
Splicing signals   GT-GA
Number of exons covered Zm00001d033850_T011:1
Zm00001d033850_T010:1
Zm00001d033850_T014:1
Zm00001d033850_T002:1
Zm00001d033850_T016:2
Zm00001d033850_T003:1
Zm00001d033850_T019:4
Zm00001d033850_T020:4
Zm00001d033850_T005:2
Zm00001d033850_T006:4
Zm00001d033850_T021:4
Zm00001d033850_T001:1
Zm00001d033850_T009:2
Zm00001d033850_T022:4
Zm00001d033850_T008:3
Zm00001d033850_T018:4
Zm00001d033850_T013:1
Zm00001d033850_T024:2
Zm00001d033850_T007:4
Zm00001d033850_T017:4
Zm00001d033850_T023:4
Zm00001d033850_T004:4
Zm00001d033850_T015:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCACTGGTACGTCGGTGAGGGTATGGAGGAAGGTGAGTTCTCTGAGGCCCGTGAGGACCTGGC
GGCGCTCGAGAAGGACTACGAGGAGGTCGGTGCTGAggttcgatggtgctcttaacgtggatgt
gaatgagttccagaccaacttggtgccctacccgaggatccacttcatgctttcctcctatgct
ccagtcat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTTCGATGGTGCTCTTAACGTGGATGTGAATGAGTTCCAGACCAACTTGGTGCCCTACCCGAG
GATCCACTTCATGCTTTCCTCCTATGCTCCAGTCATCTCTGCTGAGAAGGCCTACCACGAGCAG
CTGTCTGTGGCCGAGATCACCAACAGCGCCTTCGAGCCATCCTCCATGATGGCCAAGTGCGATC
CCCGCCATGGTAAGTACATGGCCTGCTGCCTCATGTACCGTGGTGATGTGGTCCCCAAGGATGT
GAATGCTGCTGTGGCCACCATCAAGACCAAGCGCACCATCCAGTTTGTGGACTGGTGCCCAACT
GGCTTTAAGTGCGGCATTAACTACCAGCCTCCAAGTGTGGTGCCTGGTGGTGACCTGGCCAAGG
TGCAGCGCGCTGTGTGCATGATCTCCAACTCCACCAGTGTTGTGGAGGTGTTCTCCCGCATCGA
CCACAAGTTCGACCTCATGTACGCCAAGCGTGCCTTCGTGCACTGGTATGTCGGTGAGGGTATG
GAGGAGGGCGAGTTCTCTGAGGCCCGTGAGGATCTGGCAGCGCTCGAGAAGGACTACGAGGAGG
TTGGTGCTGAGTTTGATGAGGGTGAGGAAGGTGATGATGGTGATGAGTACTAGAAGTATCCTGA
TGCGGTCATCGTCAGGCTTGTGTGCTGCTCTTGTCCCCGTTGTGGTTTGCAACACCTGATGTTG
TAAGACTTTCTGGTTATGTCCGCCCCGCTGTGCCACTGGGTTATTAAGAACGTCGTTATGGATG
GTTGTCTACACTACATTATTGCTTCTCGATATTGGAAAACTGTTATGCGCCTCGGTGGATTGTG
TTGTTGTCGTAATGTCATCACTCATACGCCGCTGGGAATTTTGAGGCCTGTCAAGCATCAGGAT
TGCGTTATGAGTTAAATGCTTCAGCGACGTTTAAACTTGTCTAAGGTGCCATCTAGATCATGAA
CTTGTCAAGGGTTGCCACTTAGATCATGAACTTCGTAAATATGTTTTTGGATCCAAAATATGTT
TTTGATCCTTAAGGGTGTGTTTGGTTGAATGTATAAGAAGGGATGAAAGAGGAATGTCATAATT
TCTATAGTGTTTGGTTGAGAGACAAGTGAGGACGAGATAAATACCTAAGAAGGGATGAAAGAGG
AATGCCACAATTTCTATAGTGTTTGGTTCAGAGACAAGTGACAATTTCTATAGTGTTTGGTTGA
GAGACAAGTGAGGGCGAGTAAATACCGCAATAATTTTTTGGTGGCACCGAATTTTTGTGAAGTT
GTATACATTTTGGACACCAATAGAAAATAGAATTAAAAAAATATAAAACTGGTGTCATTTAAAT
CAGTGTCACGTTATTAAAATTTAAAACTATCAACTAAAATTGTCTAATGGATTATTTATGTGGT
TTTGTAAAGTTGTGGAGATTAAACAACCAGTTTTGAAGATAAGTAAGTGAAATAGTCAAATATA
AAACTAGGTTAAGAATTTAGGTACACTTACGACTAGTTTAGATGCCGCAAAATGGGTTAAATTT
TTCTTCTTATTCAAAATTAAATAATAAGGTGAATTTAACTACTCTAATTTCCTCTGTTTTTTTA
ACTCCCAAACTATCCCTTATTCGTAATAATAGGAAGCGGTGACAGTTTGGTGGTGAGAACTCAG
GTATCAACAAAAAGAAATGTATTTTTGAAATATTTTGCTCGTAATGCCCTGCAAGGTTTCGATT
TCCGTAGCCAGTACATGTCCGCTCTTGACCCAGGTACTGTGTCACGAACCAACCGACCGTTGAA
CGGACGTGGAGCACGAACCATTAAAACAATCAAAATCTCAGGGGCTCAAACGAAAAAACACCGC
CCCCTTCCCTCGCTTGCGCTGGCACTCCATCGTGGGCTCGTGGCCCAGGCTGTCGTTCTGTTCT
ATAAAGCGAGACGAGTGGGAGCAGGCGTAACCCTAATTGAGCATCGCAGAGATAGGCGTCTTCG
TACTCGCCTACCTCCGCGGCTCAAACCTTTCCCCCTTCTCCCAATTCCTTCCGCCGGCCGCCGC
TCCACCCGTACGACGACACCATGAGGGAGTGCATTTCGATCCACATCGGCCAGGCCGGTATCCA
GGTCGGAAACGCGTGCTGGGAGCTGTACTGCCTTGAGCATGGCATTCAGGTAACGATCCGTCAT
TCCCTCCCCCGTTCTCCCTCTGTTGAGGTAGATCTATAATCGGTATGGGGGTTTCATCGCTAAT
ATTTGCTGGATTTTTGGTGGGGCTGAATCCGCCGGAGGAAATGACGTTTCAAATCGGTAGATCT
GTACGGATCTGGATGCATGTAATGGTGGCTACCCGGATCCGGGTTTGCTAGGTCTGATCCGGAG
AACTGGTGTCTGAGCGAGATTGCAATTGTTTTTGAACTGGAATTTTGATACGTAGAATTTGAAT
AGGGATCACCCGAAACCCACGTGCGTGGTAGATCTGAGTGCCCAGAATTCGTTTAAATGTACTG
TCAGTTTGGATCTTTGAATTTTCATAGGCTAAGTTCCGTATTGCCTGTTGATATGTGAGCCTTG
ATGTACAAATACAGACTATAGTATGTTTAGTGTTAATTTGATGTGAGCCTTGATGAATTTTCAC
AGGCTAAGTTCCATGCCCACAATGCATCCATTCATACTGTTATTAATTCTGTAAAAAAAACGAA
TACACGTCACTCTTAGGCACCTTAACCCAATTTGCATTTTTCTGTTTAAATCTGTTAGAAATGG
GATAGAGACTGGCATGTTGTTATGTAGTCCTAGCTGTTATTAGCTTTATCTAGGACTAAATGCT
GTTCACATATTTCAAGTGTTTGCAATCGGAGATTCAATCATGGCTCCCTAGGACATTTGAATCG
TGTGTCATAGTTTGAAATATGAGATTCAGGCCTGTGTTACCTTAAGATCATGCATCTGTCTGGT
CTACTACTGTAGATGGCATGTATTTTTTACATAGACTCCTTAAGTCGCATATTAACACTACTAC
ATTTGTGTTTTGTTCAGGCTGACGGTCAGATGCCCGGTGACAAGACCATTGGGGGAGGTGATGA
TGCTTTCAACACCTTCTTCAGTGAGACTGGTGCTGGGAAGCACGTGCCCCGTGCTGTTTTTGTT
GACCTTGAACCCACTGTCATCGATGAGGTGAGAACTGGCACCTACCGCCAGCTCTTCCACCCTG
AGCAGCTCATCAGTGGGAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAGTAA
GTAATCTGATCTGAGCGTCAGTTTTCACTGCTCCTTGATATTTGCTCTGTAATGAACATCTCAT
TTAAACCTGATTCCTTGTTTTGCAGTTGGCAAGGAGATTGTTGACCTGTGCCTTGATCGCATCA
GGAAGCTTGCCGACAACTGCACTGGTCTCCAGGGCTTCCTCGTCTTCAACGCTGTTGGTGGAGG
AACGGGCTCTGGCCTTGGTTCCCTCCTCCTAGAGCGCCTGTCTGTTGACTACGGCAAGAAATCC
AAGCTTGGGTTCACTGTGTACCCTTCCCCCCAAGTTTCTACTTCGGTAGTTGAGCCATACAACA
GTGTACTGTCCACCCACTCCCTCCTCGAGCACACTGATGTGGCTATACTGCTGGACAATGAGGC
CATCTACGACATCTGCCGCCGATCCCTTGACATTGAGCGCCCAACCTACACCAACCTCAACAGG
CTTGTGTCCCAGGTACTGACTTACTGTCTTGGTCTACTGCTTTCGCATTTTGCCTGGTAAACTG
GTTCAAATACTGGCTGTTGTCTGTAACAACTACCTGTTACTGATGTTGTACAGGTCATCTCATC
CCTTACTGCCTCCCTGAGGTTCGATGGTGCTCTGAACGTGGATGTTAACGAGTTCCAGACCAAC
CTGGTACCCTACCCGAGGATCCACTTCATGCTTTCTTCGTACGCTCCAGTCATCTCTGCTGAGA
AGGCCTACCACGAGCAGCTCTCTGTGGCTGAGATCACCAACAGTGCCTTCGAGCCATCTTCCAT
GATGGCCAAGTGCGACCCACGCCATGGCAAGTACATGGCCTGCTGCCTCATGTACCGTGGTGAT
GTGGTCCCCAAGGATGTGAATGCTGCTGTGGCCACCATCAAGACCAAACGCACCATCCAGTTCG
TGGATTGGTGCCCGACTGGCTTCAAGTGCGGCATCAACTACCAGCCTCCTAGCGTTGTGCCTGG
TGGCGACCTGGCCAAGGTGCAGCGTGCCGTGTGCATGATCTCCAACTCCACCAGTGTTGTGGAG
GTGTTCTCCCGCATCGACCACAAGTTCGACCTCATGTACGCCAAGCGTGCCTTCGTGCACTGGT
ACGTCGGTGAGGGTATGGAGGAAGGTGAGTTCTCTGAGGCCCGTGAGGACCTGGCGGCGCTCGA
GAAGGACTACGAGGAGGTCGGTGCTGA
Conservation Information
Conserved circRNAs osi_circ_009457*
PMCS 0.009209389
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018