Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d033850_circ_g.1 |
ID in PlantcircBase | zma_circ_003690 |
Alias | shoot_test_circ_002638 |
Organism | Zea mays |
Position | chr1: 275839813-275844721 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d033850 |
Parent gene annotation |
alpha tubulin1 |
Parent gene strand | + |
Alternative splicing | Zm00001d033850_circ_g.2 Zm00001d033850_circ_g.3 Zm00001d033850_circ_g.4 Zm00001d033850_circ_g.5 Zm00001d033850_circ_g.6 Zm00001d033850_circ_g.7 Zm00001d033850_circ_g.8 Zm00001d033850_circ_g.9 Zm00001d033850_circ_g.10 Zm00001d033850_circ_g.11 Zm00001d033850_circ_g.12 Zm00001d033850_circ_g.13 Zm00001d033850_circ_g.14 Zm00001d033850_circ_g.15 Zm00001d033850_circ_g.16 Zm00001d033850_circ_g.17 Zm00001d033850_circ_g.18 Zm00001d033850_circ_g.19 Zm00001d033850_circ_g.20 Zm00001d033850_circ_g.21 |
Support reads | NA |
Tissues | shoot |
Exon boundary | No-No |
Splicing signals | GT-TA |
Number of exons covered | Zm00001d033850_T001:4 Zm00001d033850_T004:2 Zm00001d033850_T016:1 Zm00001d033850_T005:2 Zm00001d033850_T020:1 Zm00001d033850_T010:4 Zm00001d033850_T007:2 Zm00001d033850_T018:1 Zm00001d033850_T021:1 Zm00001d033850_T017:1 Zm00001d033850_T003:4 Zm00001d033850_T022:1 Zm00001d033850_T014:3 Zm00001d033850_T019:1 Zm00001d033850_T009:5 Zm00001d033850_T023:1 Zm00001d033850_T013:3 Zm00001d033850_T015:2 Zm00001d033850_T011:4 Zm00001d033850_T006:2 Zm00001d033850_T008:1 Zm00001d033850_T002:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.082447738 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Tang et al., 2018 |