Detail information of Zm00001d033850_circ_g.14


General Information
CircRNA Name Zm00001d033850_circ_g.14
ID in PlantcircBase zma_circ_003699
Alias ovule_test_circ_005217
Organism Zea mays
Position chr1: 275842632-275846489  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d033850
Parent gene annotation alpha tubulin1
Parent gene strand +
Alternative splicing Zm00001d033850_circ_g.1 Zm00001d033850_circ_g.2 Zm00001d033850_circ_g.3 Zm00001d033850_circ_g.4 Zm00001d033850_circ_g.5 Zm00001d033850_circ_g.6 Zm00001d033850_circ_g.7 Zm00001d033850_circ_g.8 Zm00001d033850_circ_g.9 Zm00001d033850_circ_g.10 Zm00001d033850_circ_g.11 Zm00001d033850_circ_g.12 Zm00001d033850_circ_g.13 Zm00001d033850_circ_g.15 Zm00001d033850_circ_g.16 Zm00001d033850_circ_g.17 Zm00001d033850_circ_g.18 Zm00001d033850_circ_g.19 Zm00001d033850_circ_g.20 Zm00001d033850_circ_g.21
Support reads NA
Tissues ovule
Exon boundary   No-No
Splicing signals   CT-AA
Number of exons covered Zm00001d033850_T024:2
Zm00001d033850_T017:4
Zm00001d033850_T015:1
Zm00001d033850_T023:4
Zm00001d033850_T008:3
Zm00001d033850_T013:1
Zm00001d033850_T019:4
Zm00001d033850_T007:4
Zm00001d033850_T011:1
Zm00001d033850_T022:3
Zm00001d033850_T004:4
Zm00001d033850_T002:1
Zm00001d033850_T006:4
Zm00001d033850_T020:3
Zm00001d033850_T014:1
Zm00001d033850_T001:1
Zm00001d033850_T009:2
Zm00001d033850_T016:1
Zm00001d033850_T005:1
Zm00001d033850_T010:1
Zm00001d033850_T003:1
Zm00001d033850_T018:4
Zm00001d033850_T021:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTACCTGTTACTGATGTTGTACAGGTCATCTCATCCCTTACTGCCTCCCTGAGGTTCGATGGT
GCTCTGAACGTGGATGTTAACGAGTTCCAGACCAACcttggtgccctacccgaggatccacttc
atgctttcctcctatgctccagtcatctctgctgagaaggcctaccacgagcagctgtctgtgg
ccgagatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGGTGCCCTACCCGAGGATCCACTTCATGCTTTCCTCCTATGCTCCAGTCATCTCTGCTGAG
AAGGCCTACCACGAGCAGCTGTCTGTGGCCGAGATCACCAACAGCGCCTTCGAGCCATCCTCCA
TGATGGCCAAGTGCGATCCCCGCCATGGTAAGTACATGGCCTGCTGCCTCATGTACCGTGGTGA
TGTGGTCCCCAAGGATGTGAATGCTGCTGTGGCCACCATCAAGACCAAGCGCACCATCCAGTTT
GTGGACTGGTGCCCAACTGGCTTTAAGTGCGGCATTAACTACCAGCCTCCAAGTGTGGTGCCTG
GTGGTGACCTGGCCAAGGTGCAGCGCGCTGTGTGCATGATCTCCAACTCCACCAGTGTTGTGGA
GGTGTTCTCCCGCATCGACCACAAGTTCGACCTCATGTACGCCAAGCGTGCCTTCGTGCACTGG
TATGTCGGTGAGGGTATGGAGGAGGGCGAGTTCTCTGAGGCCCGTGAGGATCTGGCAGCGCTCG
AGAAGGACTACGAGGAGGTTGGTGCTGAGTTTGATGAGGGTGAGGAAGGTGATGATGGTGATGA
GTACTAGAAGTATCCTGATGCGGTCATCGTCAGGCTTGTGTGCTGCTCTTGTCCCCGTTGTGGT
TTGCAACACCTGATGTTGTAAGACTTTCTGGTTATGTCCGCCCCGCTGTGCCACTGGGTTATTA
AGAACGTCGTTATGGATGGTTGTCTACACTACATTATTGCTTCTCGATATTGGAAAACTGTTAT
GCGCCTCGGTGGATTGTGTTGTTGTCGTAATGTCATCACTCATACGCCGCTGGGAATTTTGAGG
CCTGTCAAGCATCAGGATTGCGTTATGAGTTAAATGCTTCAGCGACGTTTAAACTTGTCTAAGG
TGCCATCTAGATCATGAACTTGTCAAGGGTTGCCACTTAGATCATGAACTTCGTAAATATGTTT
TTGGATCCAAAATATGTTTTTGATCCTTAAGGGTGTGTTTGGTTGAATGTATAAGAAGGGATGA
AAGAGGAATGTCATAATTTCTATAGTGTTTGGTTGAGAGACAAGTGAGGACGAGATAAATACCT
AAGAAGGGATGAAAGAGGAATGCCACAATTTCTATAGTGTTTGGTTCAGAGACAAGTGACAATT
TCTATAGTGTTTGGTTGAGAGACAAGTGAGGGCGAGTAAATACCGCAATAATTTTTTGGTGGCA
CCGAATTTTTGTGAAGTTGTATACATTTTGGACACCAATAGAAAATAGAATTAAAAAAATATAA
AACTGGTGTCATTTAAATCAGTGTCACGTTATTAAAATTTAAAACTATCAACTAAAATTGTCTA
ATGGATTATTTATGTGGTTTTGTAAAGTTGTGGAGATTAAACAACCAGTTTTGAAGATAAGTAA
GTGAAATAGTCAAATATAAAACTAGGTTAAGAATTTAGGTACACTTACGACTAGTTTAGATGCC
GCAAAATGGGTTAAATTTTTCTTCTTATTCAAAATTAAATAATAAGGTGAATTTAACTACTCTA
ATTTCCTCTGTTTTTTTAACTCCCAAACTATCCCTTATTCGTAATAATAGGAAGCGGTGACAGT
TTGGTGGTGAGAACTCAGGTATCAACAAAAAGAAATGTATTTTTGAAATATTTTGCTCGTAATG
CCCTGCAAGGTTTCGATTTCCGTAGCCAGTACATGTCCGCTCTTGACCCAGGTACTGTGTCACG
AACCAACCGACCGTTGAACGGACGTGGAGCACGAACCATTAAAACAATCAAAATCTCAGGGGCT
CAAACGAAAAAACACCGCCCCCTTCCCTCGCTTGCGCTGGCACTCCATCGTGGGCTCGTGGCCC
AGGCTGTCGTTCTGTTCTATAAAGCGAGACGAGTGGGAGCAGGCGTAACCCTAATTGAGCATCG
CAGAGATAGGCGTCTTCGTACTCGCCTACCTCCGCGGCTCAAACCTTTCCCCCTTCTCCCAATT
CCTTCCGCCGGCCGCCGCTCCACCCGTACGACGACACCATGAGGGAGTGCATTTCGATCCACAT
CGGCCAGGCCGGTATCCAGGTCGGAAACGCGTGCTGGGAGCTGTACTGCCTTGAGCATGGCATT
CAGGTAACGATCCGTCATTCCCTCCCCCGTTCTCCCTCTGTTGAGGTAGATCTATAATCGGTAT
GGGGGTTTCATCGCTAATATTTGCTGGATTTTTGGTGGGGCTGAATCCGCCGGAGGAAATGACG
TTTCAAATCGGTAGATCTGTACGGATCTGGATGCATGTAATGGTGGCTACCCGGATCCGGGTTT
GCTAGGTCTGATCCGGAGAACTGGTGTCTGAGCGAGATTGCAATTGTTTTTGAACTGGAATTTT
GATACGTAGAATTTGAATAGGGATCACCCGAAACCCACGTGCGTGGTAGATCTGAGTGCCCAGA
ATTCGTTTAAATGTACTGTCAGTTTGGATCTTTGAATTTTCATAGGCTAAGTTCCGTATTGCCT
GTTGATATGTGAGCCTTGATGTACAAATACAGACTATAGTATGTTTAGTGTTAATTTGATGTGA
GCCTTGATGAATTTTCACAGGCTAAGTTCCATGCCCACAATGCATCCATTCATACTGTTATTAA
TTCTGTAAAAAAAACGAATACACGTCACTCTTAGGCACCTTAACCCAATTTGCATTTTTCTGTT
TAAATCTGTTAGAAATGGGATAGAGACTGGCATGTTGTTATGTAGTCCTAGCTGTTATTAGCTT
TATCTAGGACTAAATGCTGTTCACATATTTCAAGTGTTTGCAATCGGAGATTCAATCATGGCTC
CCTAGGACATTTGAATCGTGTGTCATAGTTTGAAATATGAGATTCAGGCCTGTGTTACCTTAAG
ATCATGCATCTGTCTGGTCTACTACTGTAGATGGCATGTATTTTTTACATAGACTCCTTAAGTC
GCATATTAACACTACTACATTTGTGTTTTGTTCAGGCTGACGGTCAGATGCCCGGTGACAAGAC
CATTGGGGGAGGTGATGATGCTTTCAACACCTTCTTCAGTGAGACTGGTGCTGGGAAGCACGTG
CCCCGTGCTGTTTTTGTTGACCTTGAACCCACTGTCATCGATGAGGTGAGAACTGGCACCTACC
GCCAGCTCTTCCACCCTGAGCAGCTCATCAGTGGGAAGGAGGATGCAGCCAACAACTTTGCCCG
TGGTCACTACACCAGTAAGTAATCTGATCTGAGCGTCAGTTTTCACTGCTCCTTGATATTTGCT
CTGTAATGAACATCTCATTTAAACCTGATTCCTTGTTTTGCAGTTGGCAAGGAGATTGTTGACC
TGTGCCTTGATCGCATCAGGAAGCTTGCCGACAACTGCACTGGTCTCCAGGGCTTCCTCGTCTT
CAACGCTGTTGGTGGAGGAACGGGCTCTGGCCTTGGTTCCCTCCTCCTAGAGCGCCTGTCTGTT
GACTACGGCAAGAAATCCAAGCTTGGGTTCACTGTGTACCCTTCCCCCCAAGTTTCTACTTCGG
TAGTTGAGCCATACAACAGTGTACTGTCCACCCACTCCCTCCTCGAGCACACTGATGTGGCTAT
ACTGCTGGACAATGAGGCCATCTACGACATCTGCCGCCGATCCCTTGACATTGAGCGCCCAACC
TACACCAACCTCAACAGGCTTGTGTCCCAGGTACTGACTTACTGTCTTGGTCTACTGCTTTCGC
ATTTTGCCTGGTAAACTGGTTCAAATACTGGCTGTTGTCTGTAACAACTACCTGTTACTGATGT
TGTACAGGTCATCTCATCCCTTACTGCCTCCCTGAGGTTCGATGGTGCTCTGAACGTGGATGTT
AACGAGTTCCAGACCAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.098775637
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018