Detail information of Zm00001d033850_circ_g.9


General Information
CircRNA Name Zm00001d033850_circ_g.9
ID in PlantcircBase zma_circ_003695
Alias seedlingc_test_circ_001173
Organism Zea mays
Position chr1: 275842557-275846309  JBrowse»
Reference genome AGPv4.38
Type   ui-circRNA
Identification method find_circ
Parent gene Zm00001d033850
Parent gene annotation alpha tubulin1
Parent gene strand +
Alternative splicing Zm00001d033850_circ_g.1 Zm00001d033850_circ_g.2 Zm00001d033850_circ_g.3 Zm00001d033850_circ_g.4 Zm00001d033850_circ_g.5 Zm00001d033850_circ_g.6 Zm00001d033850_circ_g.7 Zm00001d033850_circ_g.8 Zm00001d033850_circ_g.10 Zm00001d033850_circ_g.11 Zm00001d033850_circ_g.12 Zm00001d033850_circ_g.13 Zm00001d033850_circ_g.14 Zm00001d033850_circ_g.15 Zm00001d033850_circ_g.16 Zm00001d033850_circ_g.17 Zm00001d033850_circ_g.18 Zm00001d033850_circ_g.19 Zm00001d033850_circ_g.20 Zm00001d033850_circ_g.21
Support reads NA
Tissues seedling
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered Zm00001d033850_T024:1
Zm00001d033850_T010:1
Zm00001d033850_T011:1
Zm00001d033850_T001:1
Zm00001d033850_T016:1
Zm00001d033850_T008:2
Zm00001d033850_T023:3
Zm00001d033850_T009:2
Zm00001d033850_T022:3
Zm00001d033850_T003:1
Zm00001d033850_T014:1
Zm00001d033850_T015:1
Zm00001d033850_T007:3
Zm00001d033850_T005:1
Zm00001d033850_T002:1
Zm00001d033850_T004:3
Zm00001d033850_T018:3
Zm00001d033850_T020:3
Zm00001d033850_T019:3
Zm00001d033850_T021:3
Zm00001d033850_T006:3
Zm00001d033850_T013:1
Zm00001d033850_T017:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGCTATACTGCTGGACAATGAGGCCATCTACGACATCTGCCGCCGATCCCTTGACATTGAGCGC
CCAACCTACACCAACCTCAACAGGCTTGTGTCCCAGggtcatctcatccctgactgcctccctg
aggttcgatggtgctcttaacgtggatgtgaatgagttccagaccaacttggtgccctacccga
ggatccac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTCATCTCATCCCTGACTGCCTCCCTGAGGTTCGATGGTGCTCTTAACGTGGATGTGAATGAG
TTCCAGACCAACTTGGTGCCCTACCCGAGGATCCACTTCATGCTTTCCTCCTATGCTCCAGTCA
TCTCTGCTGAGAAGGCCTACCACGAGCAGCTGTCTGTGGCCGAGATCACCAACAGCGCCTTCGA
GCCATCCTCCATGATGGCCAAGTGCGATCCCCGCCATGGTAAGTACATGGCCTGCTGCCTCATG
TACCGTGGTGATGTGGTCCCCAAGGATGTGAATGCTGCTGTGGCCACCATCAAGACCAAGCGCA
CCATCCAGTTTGTGGACTGGTGCCCAACTGGCTTTAAGTGCGGCATTAACTACCAGCCTCCAAG
TGTGGTGCCTGGTGGTGACCTGGCCAAGGTGCAGCGCGCTGTGTGCATGATCTCCAACTCCACC
AGTGTTGTGGAGGTGTTCTCCCGCATCGACCACAAGTTCGACCTCATGTACGCCAAGCGTGCCT
TCGTGCACTGGTATGTCGGTGAGGGTATGGAGGAGGGCGAGTTCTCTGAGGCCCGTGAGGATCT
GGCAGCGCTCGAGAAGGACTACGAGGAGGTTGGTGCTGAGTTTGATGAGGGTGAGGAAGGTGAT
GATGGTGATGAGTACTAGAAGTATCCTGATGCGGTCATCGTCAGGCTTGTGTGCTGCTCTTGTC
CCCGTTGTGGTTTGCAACACCTGATGTTGTAAGACTTTCTGGTTATGTCCGCCCCGCTGTGCCA
CTGGGTTATTAAGAACGTCGTTATGGATGGTTGTCTACACTACATTATTGCTTCTCGATATTGG
AAAACTGTTATGCGCCTCGGTGGATTGTGTTGTTGTCGTAATGTCATCACTCATACGCCGCTGG
GAATTTTGAGGCCTGTCAAGCATCAGGATTGCGTTATGAGTTAAATGCTTCAGCGACGTTTAAA
CTTGTCTAAGGTGCCATCTAGATCATGAACTTGTCAAGGGTTGCCACTTAGATCATGAACTTCG
TAAATATGTTTTTGGATCCAAAATATGTTTTTGATCCTTAAGGGTGTGTTTGGTTGAATGTATA
AGAAGGGATGAAAGAGGAATGTCATAATTTCTATAGTGTTTGGTTGAGAGACAAGTGAGGACGA
GATAAATACCTAAGAAGGGATGAAAGAGGAATGCCACAATTTCTATAGTGTTTGGTTCAGAGAC
AAGTGACAATTTCTATAGTGTTTGGTTGAGAGACAAGTGAGGGCGAGTAAATACCGCAATAATT
TTTTGGTGGCACCGAATTTTTGTGAAGTTGTATACATTTTGGACACCAATAGAAAATAGAATTA
AAAAAATATAAAACTGGTGTCATTTAAATCAGTGTCACGTTATTAAAATTTAAAACTATCAACT
AAAATTGTCTAATGGATTATTTATGTGGTTTTGTAAAGTTGTGGAGATTAAACAACCAGTTTTG
AAGATAAGTAAGTGAAATAGTCAAATATAAAACTAGGTTAAGAATTTAGGTACACTTACGACTA
GTTTAGATGCCGCAAAATGGGTTAAATTTTTCTTCTTATTCAAAATTAAATAATAAGGTGAATT
TAACTACTCTAATTTCCTCTGTTTTTTTAACTCCCAAACTATCCCTTATTCGTAATAATAGGAA
GCGGTGACAGTTTGGTGGTGAGAACTCAGGTATCAACAAAAAGAAATGTATTTTTGAAATATTT
TGCTCGTAATGCCCTGCAAGGTTTCGATTTCCGTAGCCAGTACATGTCCGCTCTTGACCCAGGT
ACTGTGTCACGAACCAACCGACCGTTGAACGGACGTGGAGCACGAACCATTAAAACAATCAAAA
TCTCAGGGGCTCAAACGAAAAAACACCGCCCCCTTCCCTCGCTTGCGCTGGCACTCCATCGTGG
GCTCGTGGCCCAGGCTGTCGTTCTGTTCTATAAAGCGAGACGAGTGGGAGCAGGCGTAACCCTA
ATTGAGCATCGCAGAGATAGGCGTCTTCGTACTCGCCTACCTCCGCGGCTCAAACCTTTCCCCC
TTCTCCCAATTCCTTCCGCCGGCCGCCGCTCCACCCGTACGACGACACCATGAGGGAGTGCATT
TCGATCCACATCGGCCAGGCCGGTATCCAGGTCGGAAACGCGTGCTGGGAGCTGTACTGCCTTG
AGCATGGCATTCAGGTAACGATCCGTCATTCCCTCCCCCGTTCTCCCTCTGTTGAGGTAGATCT
ATAATCGGTATGGGGGTTTCATCGCTAATATTTGCTGGATTTTTGGTGGGGCTGAATCCGCCGG
AGGAAATGACGTTTCAAATCGGTAGATCTGTACGGATCTGGATGCATGTAATGGTGGCTACCCG
GATCCGGGTTTGCTAGGTCTGATCCGGAGAACTGGTGTCTGAGCGAGATTGCAATTGTTTTTGA
ACTGGAATTTTGATACGTAGAATTTGAATAGGGATCACCCGAAACCCACGTGCGTGGTAGATCT
GAGTGCCCAGAATTCGTTTAAATGTACTGTCAGTTTGGATCTTTGAATTTTCATAGGCTAAGTT
CCGTATTGCCTGTTGATATGTGAGCCTTGATGTACAAATACAGACTATAGTATGTTTAGTGTTA
ATTTGATGTGAGCCTTGATGAATTTTCACAGGCTAAGTTCCATGCCCACAATGCATCCATTCAT
ACTGTTATTAATTCTGTAAAAAAAACGAATACACGTCACTCTTAGGCACCTTAACCCAATTTGC
ATTTTTCTGTTTAAATCTGTTAGAAATGGGATAGAGACTGGCATGTTGTTATGTAGTCCTAGCT
GTTATTAGCTTTATCTAGGACTAAATGCTGTTCACATATTTCAAGTGTTTGCAATCGGAGATTC
AATCATGGCTCCCTAGGACATTTGAATCGTGTGTCATAGTTTGAAATATGAGATTCAGGCCTGT
GTTACCTTAAGATCATGCATCTGTCTGGTCTACTACTGTAGATGGCATGTATTTTTTACATAGA
CTCCTTAAGTCGCATATTAACACTACTACATTTGTGTTTTGTTCAGGCTGACGGTCAGATGCCC
GGTGACAAGACCATTGGGGGAGGTGATGATGCTTTCAACACCTTCTTCAGTGAGACTGGTGCTG
GGAAGCACGTGCCCCGTGCTGTTTTTGTTGACCTTGAACCCACTGTCATCGATGAGGTGAGAAC
TGGCACCTACCGCCAGCTCTTCCACCCTGAGCAGCTCATCAGTGGGAAGGAGGATGCAGCCAAC
AACTTTGCCCGTGGTCACTACACCAGTAAGTAATCTGATCTGAGCGTCAGTTTTCACTGCTCCT
TGATATTTGCTCTGTAATGAACATCTCATTTAAACCTGATTCCTTGTTTTGCAGTTGGCAAGGA
GATTGTTGACCTGTGCCTTGATCGCATCAGGAAGCTTGCCGACAACTGCACTGGTCTCCAGGGC
TTCCTCGTCTTCAACGCTGTTGGTGGAGGAACGGGCTCTGGCCTTGGTTCCCTCCTCCTAGAGC
GCCTGTCTGTTGACTACGGCAAGAAATCCAAGCTTGGGTTCACTGTGTACCCTTCCCCCCAAGT
TTCTACTTCGGTAGTTGAGCCATACAACAGTGTACTGTCCACCCACTCCCTCCTCGAGCACACT
GATGTGGCTATACTGCTGGACAATGAGGCCATCTACGACATCTGCCGCCGATCCCTTGACATTG
AGCGCCCAACCTACACCAACCTCAACAGGCTTGTGTCCCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.573892793
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018