Detail information of Zm00001d033850_circ_g.16


General Information
CircRNA Name Zm00001d033850_circ_g.16
ID in PlantcircBase zma_circ_003701
Alias ovule_test_circ_001957
Organism Zea mays
Position chr1: 275843160-275847017  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d033850
Parent gene annotation alpha tubulin1
Parent gene strand +
Alternative splicing Zm00001d033850_circ_g.1 Zm00001d033850_circ_g.2 Zm00001d033850_circ_g.3 Zm00001d033850_circ_g.4 Zm00001d033850_circ_g.5 Zm00001d033850_circ_g.6 Zm00001d033850_circ_g.7 Zm00001d033850_circ_g.8 Zm00001d033850_circ_g.9 Zm00001d033850_circ_g.10 Zm00001d033850_circ_g.11 Zm00001d033850_circ_g.12 Zm00001d033850_circ_g.13 Zm00001d033850_circ_g.14 Zm00001d033850_circ_g.15 Zm00001d033850_circ_g.17 Zm00001d033850_circ_g.18 Zm00001d033850_circ_g.19 Zm00001d033850_circ_g.20 Zm00001d033850_circ_g.21
Support reads NA
Tissues ovule
Exon boundary   No-No
Splicing signals   GT-GA
Number of exons covered Zm00001d033850_T023:4
Zm00001d033850_T009:1
Zm00001d033850_T017:4
Zm00001d033850_T004:4
Zm00001d033850_T010:1
Zm00001d033850_T022:4
Zm00001d033850_T018:4
Zm00001d033850_T001:1
Zm00001d033850_T007:4
Zm00001d033850_T002:1
Zm00001d033850_T006:4
Zm00001d033850_T005:2
Zm00001d033850_T021:4
Zm00001d033850_T016:1
Zm00001d033850_T008:3
Zm00001d033850_T015:1
Zm00001d033850_T013:1
Zm00001d033850_T003:1
Zm00001d033850_T014:1
Zm00001d033850_T019:4
Zm00001d033850_T020:4
Zm00001d033850_T024:2
Zm00001d033850_T011:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCGTGCCTTCGTGCACTGGTACGTCGGTGAGGGTATGGAGGAAGGTGAGTTCTCTGAGGCCCGT
GAGGACCTGGCGGCGCTCGAGAAGGACTACGAGGAGggttggtgctgagtttgatgagggtgag
gaaggtgatgatggtgatgagtactagaagtatcctgatgcggtcatcgtcaggcttgtgtgct
gctcttgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTTGGTGCTGAGTTTGATGAGGGTGAGGAAGGTGATGATGGTGATGAGTACTAGAAGTATCCT
GATGCGGTCATCGTCAGGCTTGTGTGCTGCTCTTGTCCCCGTTGTGGTTTGCAACACCTGATGT
TGTAAGACTTTCTGGTTATGTCCGCCCCGCTGTGCCACTGGGTTATTAAGAACGTCGTTATGGA
TGGTTGTCTACACTACATTATTGCTTCTCGATATTGGAAAACTGTTATGCGCCTCGGTGGATTG
TGTTGTTGTCGTAATGTCATCACTCATACGCCGCTGGGAATTTTGAGGCCTGTCAAGCATCAGG
ATTGCGTTATGAGTTAAATGCTTCAGCGACGTTTAAACTTGTCTAAGGTGCCATCTAGATCATG
AACTTGTCAAGGGTTGCCACTTAGATCATGAACTTCGTAAATATGTTTTTGGATCCAAAATATG
TTTTTGATCCTTAAGGGTGTGTTTGGTTGAATGTATAAGAAGGGATGAAAGAGGAATGTCATAA
TTTCTATAGTGTTTGGTTGAGAGACAAGTGAGGACGAGATAAATACCTAAGAAGGGATGAAAGA
GGAATGCCACAATTTCTATAGTGTTTGGTTCAGAGACAAGTGACAATTTCTATAGTGTTTGGTT
GAGAGACAAGTGAGGGCGAGTAAATACCGCAATAATTTTTTGGTGGCACCGAATTTTTGTGAAG
TTGTATACATTTTGGACACCAATAGAAAATAGAATTAAAAAAATATAAAACTGGTGTCATTTAA
ATCAGTGTCACGTTATTAAAATTTAAAACTATCAACTAAAATTGTCTAATGGATTATTTATGTG
GTTTTGTAAAGTTGTGGAGATTAAACAACCAGTTTTGAAGATAAGTAAGTGAAATAGTCAAATA
TAAAACTAGGTTAAGAATTTAGGTACACTTACGACTAGTTTAGATGCCGCAAAATGGGTTAAAT
TTTTCTTCTTATTCAAAATTAAATAATAAGGTGAATTTAACTACTCTAATTTCCTCTGTTTTTT
TAACTCCCAAACTATCCCTTATTCGTAATAATAGGAAGCGGTGACAGTTTGGTGGTGAGAACTC
AGGTATCAACAAAAAGAAATGTATTTTTGAAATATTTTGCTCGTAATGCCCTGCAAGGTTTCGA
TTTCCGTAGCCAGTACATGTCCGCTCTTGACCCAGGTACTGTGTCACGAACCAACCGACCGTTG
AACGGACGTGGAGCACGAACCATTAAAACAATCAAAATCTCAGGGGCTCAAACGAAAAAACACC
GCCCCCTTCCCTCGCTTGCGCTGGCACTCCATCGTGGGCTCGTGGCCCAGGCTGTCGTTCTGTT
CTATAAAGCGAGACGAGTGGGAGCAGGCGTAACCCTAATTGAGCATCGCAGAGATAGGCGTCTT
CGTACTCGCCTACCTCCGCGGCTCAAACCTTTCCCCCTTCTCCCAATTCCTTCCGCCGGCCGCC
GCTCCACCCGTACGACGACACCATGAGGGAGTGCATTTCGATCCACATCGGCCAGGCCGGTATC
CAGGTCGGAAACGCGTGCTGGGAGCTGTACTGCCTTGAGCATGGCATTCAGGTAACGATCCGTC
ATTCCCTCCCCCGTTCTCCCTCTGTTGAGGTAGATCTATAATCGGTATGGGGGTTTCATCGCTA
ATATTTGCTGGATTTTTGGTGGGGCTGAATCCGCCGGAGGAAATGACGTTTCAAATCGGTAGAT
CTGTACGGATCTGGATGCATGTAATGGTGGCTACCCGGATCCGGGTTTGCTAGGTCTGATCCGG
AGAACTGGTGTCTGAGCGAGATTGCAATTGTTTTTGAACTGGAATTTTGATACGTAGAATTTGA
ATAGGGATCACCCGAAACCCACGTGCGTGGTAGATCTGAGTGCCCAGAATTCGTTTAAATGTAC
TGTCAGTTTGGATCTTTGAATTTTCATAGGCTAAGTTCCGTATTGCCTGTTGATATGTGAGCCT
TGATGTACAAATACAGACTATAGTATGTTTAGTGTTAATTTGATGTGAGCCTTGATGAATTTTC
ACAGGCTAAGTTCCATGCCCACAATGCATCCATTCATACTGTTATTAATTCTGTAAAAAAAACG
AATACACGTCACTCTTAGGCACCTTAACCCAATTTGCATTTTTCTGTTTAAATCTGTTAGAAAT
GGGATAGAGACTGGCATGTTGTTATGTAGTCCTAGCTGTTATTAGCTTTATCTAGGACTAAATG
CTGTTCACATATTTCAAGTGTTTGCAATCGGAGATTCAATCATGGCTCCCTAGGACATTTGAAT
CGTGTGTCATAGTTTGAAATATGAGATTCAGGCCTGTGTTACCTTAAGATCATGCATCTGTCTG
GTCTACTACTGTAGATGGCATGTATTTTTTACATAGACTCCTTAAGTCGCATATTAACACTACT
ACATTTGTGTTTTGTTCAGGCTGACGGTCAGATGCCCGGTGACAAGACCATTGGGGGAGGTGAT
GATGCTTTCAACACCTTCTTCAGTGAGACTGGTGCTGGGAAGCACGTGCCCCGTGCTGTTTTTG
TTGACCTTGAACCCACTGTCATCGATGAGGTGAGAACTGGCACCTACCGCCAGCTCTTCCACCC
TGAGCAGCTCATCAGTGGGAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAGT
AAGTAATCTGATCTGAGCGTCAGTTTTCACTGCTCCTTGATATTTGCTCTGTAATGAACATCTC
ATTTAAACCTGATTCCTTGTTTTGCAGTTGGCAAGGAGATTGTTGACCTGTGCCTTGATCGCAT
CAGGAAGCTTGCCGACAACTGCACTGGTCTCCAGGGCTTCCTCGTCTTCAACGCTGTTGGTGGA
GGAACGGGCTCTGGCCTTGGTTCCCTCCTCCTAGAGCGCCTGTCTGTTGACTACGGCAAGAAAT
CCAAGCTTGGGTTCACTGTGTACCCTTCCCCCCAAGTTTCTACTTCGGTAGTTGAGCCATACAA
CAGTGTACTGTCCACCCACTCCCTCCTCGAGCACACTGATGTGGCTATACTGCTGGACAATGAG
GCCATCTACGACATCTGCCGCCGATCCCTTGACATTGAGCGCCCAACCTACACCAACCTCAACA
GGCTTGTGTCCCAGGTACTGACTTACTGTCTTGGTCTACTGCTTTCGCATTTTGCCTGGTAAAC
TGGTTCAAATACTGGCTGTTGTCTGTAACAACTACCTGTTACTGATGTTGTACAGGTCATCTCA
TCCCTTACTGCCTCCCTGAGGTTCGATGGTGCTCTGAACGTGGATGTTAACGAGTTCCAGACCA
ACCTGGTACCCTACCCGAGGATCCACTTCATGCTTTCTTCGTACGCTCCAGTCATCTCTGCTGA
GAAGGCCTACCACGAGCAGCTCTCTGTGGCTGAGATCACCAACAGTGCCTTCGAGCCATCTTCC
ATGATGGCCAAGTGCGACCCACGCCATGGCAAGTACATGGCCTGCTGCCTCATGTACCGTGGTG
ATGTGGTCCCCAAGGATGTGAATGCTGCTGTGGCCACCATCAAGACCAAACGCACCATCCAGTT
CGTGGATTGGTGCCCGACTGGCTTCAAGTGCGGCATCAACTACCAGCCTCCTAGCGTTGTGCCT
GGTGGCGACCTGGCCAAGGTGCAGCGTGCCGTGTGCATGATCTCCAACTCCACCAGTGTTGTGG
AGGTGTTCTCCCGCATCGACCACAAGTTCGACCTCATGTACGCCAAGCGTGCCTTCGTGCACTG
GTACGTCGGTGAGGGTATGGAGGAAGGTGAGTTCTCTGAGGCCCGTGAGGACCTGGCGGCGCTC
GAGAAGGACTACGAGGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.252074238
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018