Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Os10g0521700_circ_g.1 |
ID in PlantcircBase | osa_circ_007715 |
Alias | NA |
Organism | Oryza sativa |
Position | chr10: 20197242-20198354 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os10g0521700 |
Parent gene annotation |
Similar to Shaggy-related protein kinase NtK-1 (EC 2.7.1.-). (Os 10t0521700-01) |
Parent gene strand | - |
Alternative splicing | Os10g0521700_circ_g.2 Os10g0521700_circ_g.3 Os10g0521700_circ_g.4 Os10g0521700_circ_g.5 Os10g0521700_circ_g.6 Os10g0521700_circ_g.7 Os10g0521700_circ_g.8 Os10g0521700_circ_g.9 Os10g0521700_circ_g.10 Os10g0521801_circ_g.1 Os10g0521801_circ_g.2 Os10g0521801_circ_g.3 Os10g0521801_circ_g.4 |
Support reads | 1 |
Tissues | shoot, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os10t0521700-01:5 |
Conservation Information | |
---|---|
Conserved circRNAs | osi_circ_008612 zma_circ_003083 |
PMCS | 0.309928729 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
20197789-20198346(-) 20197342-20198346(-) |
Potential amino acid sequence |
MNPNYSEFKFPQIKAHPWHKLFGKRMPPEAVDLVSRLLQYSPNLRCTAVDACAHPFFDELRDPK TCLSNGRSLPPLFDFSAAGSW*(-) MLVLIHSLMNCGIPRPACQMDDHYHPCSTSQLLVPGEPNISYICSRYYRAPELIFGATEYTTAI DIWSVGCVLAELLIGQPLFPGESGVDQLVEIIKILGTPTREEIRCMNPNYSEFKFPQIKAHPWH KLFGKRMPPEAVDLVSRLLQYSPNLRCTAVDACAHPFFDELRDPKTCLSNGRSLPPLFDFSAAG SW*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Chu et al., 2017 |