Detail information of Os10g0521801_circ_g.3


General Information
CircRNA Name Os10g0521801_circ_g.3
ID in PlantcircBase osa_circ_007727
Alias Os10circ08188/Os_ciR941
Organism Oryza sativa
Position chr10: 20199684-20200646  JBrowse»
Reference genome IRGSP-1.0.38
Type   ui-circRNA
Identification method SMALT, Segemehl, find_circ
Parent gene Os10g0521801
Parent gene annotation Hypothetical gene. (Os10t0521801-00)
Parent gene strand +
Alternative splicing Os10g0521700_circ_g.1 Os10g0521700_circ_g.2 Os10g0521700_circ_g.3 Os10g0521700_circ_g.4 Os10g0521700_circ_g.5 Os10g0521700_circ_g.6 Os10g0521700_circ_g.7 Os10g0521700_circ_g.8 Os10g0521700_circ_g.9 Os10g0521700_circ_g.10 Os10g0521801_circ_g.1 Os10g0521801_circ_g.2 Os10g0521801_circ_g.4
Support reads 3/16
Tissues leaf/root
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered Os10t0521700-01:2
Os10t0521700-01:2
Os10t0521801-00:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTATACCACCGTCCAGCCATCGCCAATGCAGCATCAAATCTCCTCATGAGCCCATGAAGCATG
AACACCAGGGAATAAATGTTCCACATTGCTACAGCTctgctttggcttcccattttgacctcca
attgatgtcacaataatctgacctgtttctgttccatttgcattaacaataacaccttcagatt
cctataat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 301
Transcript exons: 20199684-20199758,20199984-20200119,20200557-20200646
CTGCTTTGGCTTCCCATTTTGACCTCCAATTGATGTCACAATAATCTGACCTGTTTCTGTTCCA
TTTGCATTAACTCAGCATCTCTATGAGATGAAGATGATTCTTGGTCTACGCGCATAGGTTTGTC
ATCAGTTAGATGTGGCTCAATGACTATATCTCCTGCTCCATCCTGATCGAATTTTGGTCTTTTG
GTGCCAGAATCACCACCCTCGTCCAGCCATCGCCAATGCAGCATCAAATCTCCTCATGAGCCCA
TGAAGCATGAACACCAGGGAATAAATGTTCCACATTGCTACAGCT

Genomic sequence CTGCTTTGGCTTCCCATTTTGACCTCCAATTGATGTCACAATAATCTGACCTGTTTCTGTTCCA
TTTGCATTAACAATAACACCTTCAGATTCCTATAATCAGAAAAACTACGACATAAGTAACGAAA
GTAGGGTGGCATTATGTCAAGAAGTGACAAGTCAAATGGTATCAAAATAACCTTATCATTATGG
CCATCAACTTTATCATCACTTATTGTCATCTCATTCATTTCTTTTGGAAGAATATCCGCACCTG
CTTCTTCAGTTCTACCAGGATTCTTACTAGTAGATGTGCTTGCCTCAGCATCTCTATGAGATGA
AGATGATTCTTGGTCTACGCGCATAGGTTTGTCATCAGTTAGATGTGGCTCAATGACTATATCT
CCTGCTCCATCCTGATCGAATTTTGGTCTTTTGGTGCCAGAATCACCACCCTAACAAGAACAAT
ATAGGTTATCAACTCAAGCTCATAATAGGGAGGAGAAACTAATCCTACTTTCCTTATTCTCAAG
CACAGAATTCATATTCATCCGCTAGAAGTCACATACTATACCTATTAGCTAACATTGTGCATCA
AACTCTTCCACCAATTCATTCTACAATATACACTGCCCAGTGCCCAATTTTTTTATTGTGATTG
GTGAGCAATGTTTTGTTCTCAGTATTATGAGACATCAACTACGTCATCAATCACATCCTTCTGA
AAAGCTGTTCAACGCTCAACAAAGCAAGACTACGATTAAGGGACATGACCAAAGCAGACCCATC
ATGAAAAGTTACACATTGAAAAGCATTTCCTTGATAACTTCCCAATCCAATAAACCTATTATTG
GCAGATTCTCTTTTTCTAGTAATGTCGGACAGCTATACCACCGTCCAGCCATCGCCAATGCAGC
ATCAAATCTCCTCATGAGCCCATGAAGCATGAACACCAGGGAATAAATGTTCCACATTGCTACA
GCT
Conservation Information
Conserved circRNAs osi_circ_002913* osi_circ_008617
PMCS 0.527026899
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015;Ye et al., 2015