Detail information of Os10g0521700_circ_g.3


General Information
CircRNA Name Os10g0521700_circ_g.3
ID in PlantcircBase osa_circ_007717
Alias NA
Organism Oryza sativa
Position chr10: 20197242-20200117  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os10g0521700
Parent gene annotation Similar to Shaggy-related protein kinase NtK-1 (EC 2.7.1.-). (Os
10t0521700-01)
Parent gene strand -
Alternative splicing Os10g0521700_circ_g.1 Os10g0521700_circ_g.2 Os10g0521700_circ_g.4 Os10g0521700_circ_g.5 Os10g0521700_circ_g.6 Os10g0521700_circ_g.7 Os10g0521700_circ_g.8 Os10g0521700_circ_g.9 Os10g0521700_circ_g.10 Os10g0521801_circ_g.1 Os10g0521801_circ_g.2 Os10g0521801_circ_g.3 Os10g0521801_circ_g.4
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os10t0521700-01:11
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTACGCGCATAGGTTTGTCATCAGTTAGATGTGGCTCAATGACTATATCTCCTGCTCCATCCTG
ATCGAATTTTGGTCTTTTGGTGCCAGAATCACCACCcagcagctgagaagtcgaacaagggtgg
taatgatcgtccatttgacaagcaggtcttgggatcccgcagttcatcaaagaatggatgagca
caagcatc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1288
Transcript exons: 20197242-20197344,20197568-20197651,20197728-20197823,20
197906-20197956,20198214-20198354,20198429-20198485,2019
8730-20198804,20198908-20199180,20199285-20199344,201996
84-20199776,20199863-20200117
CAGCAGCTGAGAAGTCGAACAAGGGTGGTAATGATCGTCCATTTGACAAGCAGGTCTTGGGATC
CCGCAGTTCATCAAAGAATGGATGAGCACAAGCATCAACAGCTGTGCAACGCAAATTTGGCGAG
TACTGCAGCAACCTTGACACAAGATCAACAGCTTCAGGTGGCATGCGCTTACCAAAAAGCTTGT
GCCATGGATGAGCTTTTATCTGAGGGAATTTGAATTCAGAATAGTTTGGATTCATGCACCTGAT
TTCTTCTCTAGTTGGTGTACCCAAAATCTTTATTATTTCCACCAGTTGATCAACACCACTTTCT
CCAGGGAACAGAGGCTGACCAATCAGAAGCTCAGCTAGTACACAACCAACAGACCAGATATCAA
TTGCTGTGGTATACTCTGTAGCTCCAAATATTAGTTCAGGAGCCCTATAATACCGCGAGCAAAT
GTATGATATGTTAGGTTCACCAGGAACCAATTTCTTAGCACTTCCAAAATCACAAAGCTTCAGT
TGATGTGTATGAGGATTGACCAGTAGATTTTGAGGTTTAATATCTCGATGGCAGACACCAACAA
CACGATGGATATATGCAAGGGCACGGCACATCTGATATGCATACAGCTTAACATGCAATATGGG
CACACGCTGGTTCATCCGATTGTAGTATTTAGCAACACGATAAACTGTCTCTGAGACATATTCA
AGTACAAGGTTGAGGTAAACTTCACCCCTCTCAGTCGTCGAAAAGAAGTGATGCTTTAGCTGGA
CCACATTAGGATGGTCAAGCAGTTGCATTGTTTGGAGCTCTCTGTTCTTATATCTTTTATCTTG
CAGAACCTTCTTAATGGCAACAGTCTCTCCAGTTTCCAAGCACTTGGCCTGAAAAACTACACCA
AATGAACCAGTACCAACTACACGTTCTGCCATGTATGATACCTTCTGCTTTGGCTTCCCATTTT
GACCTCCAATTGATGTCACAATAATCTGACCTGTTTCTGTTCCATTTGCATTAACAATAACACC
TTCAGATTCCTTATCATTATGGCCATCAACTTTATCATCACTTATTGTCATCTCATTCATTTCT
TTTGGAAGAATATCCGCACCTGCTTCTTCAGTTCTACCAGGATTCTTACTAGTAGATGTGCTTG
CCTCAGCATCTCTATGAGATGAAGATGATTCTTGGTCTACGCGCATAGGTTTGTCATCAGTTAG
ATGTGGCTCAATGACTATATCTCCTGCTCCATCCTGATCGAATTTTGGTCTTTTGGTGCCAGAA
TCACCACC

Genomic sequence CAGCAGCTGAGAAGTCGAACAAGGGTGGTAATGATCGTCCATTTGACAAGCAGGTCTTGGGATC
CCGCAGTTCATCAAAGAATGGATGAGCACAAGCATCAACCTGGAAGAACAGCCAAATACGTTTA
ATCAGAACAGTAATCAAGATTTTTTTTGTTTCTTTGTTTCCCAATCTAGGACTAATTAGTAGAT
ACAAACATAATATATCATATGTAGTACAACACTTTCTTATGAGGAAATTAGATTATTGTGCTCA
TGATGATCCACCTAATACCGATCTGGTTCAATAATTAGTTAAAATGGCTCAAATCCAATATTAG
TCTTACAGCTGTGCAACGCAAATTTGGCGAGTACTGCAGCAACCTTGACACAAGATCAACAGCT
TCAGGTGGCATGCGCTTACCAAAAAGCTGCAGTTGGAAAAATTTTGTGAGAAGGTTACATCAGT
GTAGAACTAAAGTGCTATGGAATTAGAGATCCACCAACCTTGTGCCATGGATGAGCTTTTATCT
GAGGGAATTTGAATTCAGAATAGTTTGGATTCATGCACCTGATTTCTTCTCTAGTTGGTGTACC
CAAAATCTATAATAAGAAAAAAAAACAAGAAATGGATCAGTCCACAGACCTAAATTACTGTCTC
TAATGGATGACAGGAGATAGAAACCTTTATTATTTCCACCAGTTGATCAACACCACTTTCTCCA
GGGAACAGAGGCTGCAATTGTCCATATTCGGAAAAAAGATCAGCCAAAGCAGGAAAGAGTCTTG
CAGCACAGCATCCATTATTAACCCCCAACCCCCATAAAATGAAGTACTTGCATTCAAATGGAAA
TGCTGAGTTATGTTATTTATTTTTTGGTAATGGTGTGACTTAAGATAACAGTAAGTTCGATACA
AAATTATTCAATCAAGTATATCCTCGGGTCATGAACTTGACTAGAAAAAAACTGAGCTGCTAGA
ATGATTCTATACCTGACCAATCAGAAGCTCAGCTAGTACACAACCAACAGACCAGATATCAATT
GCTGTGGTATACTCTGTAGCTCCAAATATTAGTTCAGGAGCCCTATAATACCGCGAGCAAATGT
ATGATATGTTAGGTTCACCAGGAACCTGAAATGGAGTGTCTGCATTGTCAAATACATGTGCAAC
ACAGAATCAACATGCTAGCAGGACAAGAAGCATACCAATTTCTTAGCACTTCCAAAATCACAAA
GCTTCAGTTGATGTGTATGAGGATTGACCTGAAAAATCGATCAACTTGCAATGAGACAATTGCT
TGTACAGCAGGTTTACTTATATCACAACACATAAACAGCTGAAAATATTGCAGGCAATCATGCT
TTTGCACAAGCTGCAAATGCATGTTTCAATCTTAAACTCCATCATCTGTTTACAAGTACCCAAA
TAGTAAAAAAGGGAAAAGAACACTTGCAAAGCATGCCCTGAGGAGGGGTGCCTGATAAAAATGA
GTCTCATGATACATACCAGTAGATTTTGAGGTTTAATATCTCGATGGCAGACACCAACAACACG
ATGGATATATGCAAGGGCACGGCACATCTATGAAAAATAGTAAAACACATTAGAACAAATAATT
TCTTTAGAATCATGGATTTAACAGTTTGAAATGATCTACAAAGCTAAAATTATAACTTATACAG
ACCTGATATGCATACAGCTTAACATGCAATATGGGCACACGCTGGTTCATCCGATTGTAGTATT
TAGCAACACGATAAACTGTCTCTGAGACATATTCAAGTACAAGGTTGAGGTAAACTTCACCCCT
CTCAGTCGTCGAAAAGAAGTGATGCTTTAGCTGGACCACATTAGGATGGTCAAGCAGTTGCATT
GTTTGGAGCTCTCTGTTCTTATATCTTTTATCTTGCAGAACCTTCTTAATGGCAACAGTCTCTC
CAGTTTCCAAGCACTTGGCCTGTTTGTATCAATAACTGGTCAATAACTTTATGCCCAAATATTG
TAAATTTCCATCATGACGAGGAGTAGCGATACAGAATGGCAAAATGTGAAATAATATACCTGAA
AAACTACACCAAATGAACCAGTACCAACTACACGTTCTGCCATGTATGATACCTTCTGTAAAAC
AATTAGCACACATTAATGTTTGACCCTGCCTGTATGTAAAGAATGTAGTATAGCAAACATCCAA
GAGAACGCTACTTTTTCCTAAGCAAAAATACACAACCATCAGGAAGAAATAACACCCGCAATAC
TGATGGAATGCATTGCATCATAGTGTGTTTTTTTTCTTTTTTTTTGGGGGGTGGGGGGGGAGGG
GGGTTGAAGGAAGGAATCTCCCAGTTTTCAGGGCATGAAGATATTTTCAGTGCTGATGCATTGT
ATTAATATCCAGCAGATCCAGCAGAACGCATGAGAGAGAATGGTGCAGATAAACATAATGGGTT
GATGCATCACCTGCTTTGGCTTCCCATTTTGACCTCCAATTGATGTCACAATAATCTGACCTGT
TTCTGTTCCATTTGCATTAACAATAACACCTTCAGATTCCTATAATCAGAAAAACTACGACATA
AGTAACGAAAGTAGGGTGGCATTATGTCAAGAAGTGACAAGTCAAATGGTATCAAAATAACCTT
ATCATTATGGCCATCAACTTTATCATCACTTATTGTCATCTCATTCATTTCTTTTGGAAGAATA
TCCGCACCTGCTTCTTCAGTTCTACCAGGATTCTTACTAGTAGATGTGCTTGCCTCAGCATCTC
TATGAGATGAAGATGATTCTTGGTCTACGCGCATAGGTTTGTCATCAGTTAGATGTGGCTCAAT
GACTATATCTCCTGCTCCATCCTGATCGAATTTTGGTCTTTTGGTGCCAGAATCACCACC
Conservation Information
Conserved circRNAs NA
PMCS 0.248095909
Functional Information
Coding potential Y
Potential coding position 20200047-20197762(+)
20200029-20200112(-)
20197342-20200112(-)
Potential amino acid sequence MWLNDYISCSILIEFWSFGARITTQQLRSRTRVVMIVHLTSRSWDPAVHQRMDEHKHQQLCNAN
LASTAATLTQDQQLQVACAYQKACAMDELLSEGI*(+)
MRVDQESSSSHRDAEASTSTSKNPGRTEEAGADILPKEMNEMTISDDKVDGHNDKESEGVIVNA
NGTETGQIIVTSIGGQNGKPKQKVSYMAERVVGTGSFGVVFQAKCLETGETVAIKKVLQDKRYK
NRELQTMQLLDHPNVVQLKHHFFSTTERGEVYLNLVLEYVSETVYRVAKYYNRMNQRVPILHVK
LYAYQMCRALAYIHRVVGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKKLVPGEPNISYICSRYY
RAPELIFGATEYTTAIDIWSVGCVLAELLIGQPLFPGESGVDQLVEIIKILGTPTREEIRCMNP
NYSEFKFPQIKAHPWHKLFGKRMPPEAVDLVSRLLQYSPNLRCTAVDACAHPFFDELRDPKTCL
SNGRSLPPLFDFSAAGW*(-)
MLVLIHSLMNCGIPRPACQMDDHYHPCSTSQLLGGDSGTKRPKFDQDGAGDIVIEPHLTDDKPM
RVDQESSSSHRDAEASTSTSKNPGRTEEAGADILPKEMNEMTISDDKVDGHNDKESEGVIVNAN
GTETGQIIVTSIGGQNGKPKQKVSYMAERVVGTGSFGVVFQAKCLETGETVAIKKVLQDKRYKN
RELQTMQLLDHPNVVQLKHHFFSTTERGEVYLNLVLEYVSETVYRVAKYYNRMNQRVPILHVKL
YAYQMCRALAYIHRVVGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKKLVPGEPNISYICSRYYR
APELIFGATEYTTAIDIWSVGCVLAELLIGQPLFPGESGVDQLVEIIKILGTPTREEIRCMNPN
YSEFKFPQIKAHPWHKLFGKRMPPEAVDLVSRLLQYSPNLRCTAVDACAHPFFDELRDPKTCLS
NGRSLPPLFDFSAAGW*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017