Detail information of Os10g0521801_circ_g.1


General Information
CircRNA Name Os10g0521801_circ_g.1
ID in PlantcircBase osa_circ_007725
Alias NA
Organism Oryza sativa
Position chr10: 20199683-20200116  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method PcircRNA_finder
Parent gene Os10g0521801
Parent gene annotation Hypothetical gene. (Os10t0521801-00)
Parent gene strand +
Alternative splicing Os10g0521700_circ_g.1 Os10g0521700_circ_g.2 Os10g0521700_circ_g.3 Os10g0521700_circ_g.4 Os10g0521700_circ_g.5 Os10g0521700_circ_g.6 Os10g0521700_circ_g.7 Os10g0521700_circ_g.8 Os10g0521700_circ_g.9 Os10g0521700_circ_g.10 Os10g0521801_circ_g.2 Os10g0521801_circ_g.3 Os10g0521801_circ_g.4
Support reads 4
Tissues seed
Exon boundary   No-Yes
Splicing signals   CC-CA
Number of exons covered Os10t0521700-01:2
Os10t0521801-00:2
Os10t0521700-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTACGCGCATAGGTTTGTCATCAGTTAGATGTGGCTCAATGACTATATCTCCTGCTCCATCCT
GATCGAATTTTGGTCTTTTGGTGCCAGAATCACCACcctgctttggcttcccattttgacctcc
aattgatgtcacaataatctgacctgtttctgttccatttgcattaacaataacaccttcagat
tcctataa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGCTTTGGCTTCCCATTTTGACCTCCAATTGATGTCACAATAATCTGACCTGTTTCTGTTCC
ATTTGCATTAACAATAACACCTTCAGATTCCTATAATCAGAAAAACTACGACATAAGTAACGAA
AGTAGGGTGGCATTATGTCAAGAAGTGACAAGTCAAATGGTATCAAAATAACCTTATCATTATG
GCCATCAACTTTATCATCACTTATTGTCATCTCATTCATTTCTTTTGGAAGAATATCCGCACCT
GCTTCTTCAGTTCTACCAGGATTCTTACTAGTAGATGTGCTTGCCTCAGCATCTCTATGAGATG
AAGATGATTCTTGGTCTACGCGCATAGGTTTGTCATCAGTTAGATGTGGCTCAATGACTATATC
TCCTGCTCCATCCTGATCGAATTTTGGTCTTTTGGTGCCAGAATCACCAC
Conservation Information
Conserved circRNAs osi_circ_002912 osi_circ_008616
PMCS 0.629628706
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017