Detail information of Os10g0521700_circ_g.10


General Information
CircRNA Name Os10g0521700_circ_g.10
ID in PlantcircBase osa_circ_007724
Alias Os_ciR6859
Organism Oryza sativa
Position chr10: 20198730-20200117  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os10g0521700
Parent gene annotation Similar to Shaggy-related protein kinase NtK-1 (EC 2.7.1.-). (Os
10t0521700-01)
Parent gene strand -
Alternative splicing Os10g0521700_circ_g.1 Os10g0521700_circ_g.2 Os10g0521700_circ_g.3 Os10g0521700_circ_g.4 Os10g0521700_circ_g.5 Os10g0521700_circ_g.6 Os10g0521700_circ_g.7 Os10g0521700_circ_g.8 Os10g0521700_circ_g.9 Os10g0521801_circ_g.1 Os10g0521801_circ_g.2 Os10g0521801_circ_g.3 Os10g0521801_circ_g.4
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os10t0521700-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTACGCGCATAGGTTTGTCATCAGTTAGATGTGGCTCAATGACTATATCTCCTGCTCCATCCTG
ATCGAATTTTGGTCTTTTGGTGCCAGAATCACCACCcagtagattttgaggtttaatatctcga
tggcagacaccaacaacacgatggatatatgcaagggcacggcacatctatgaaaaatagtaaa
acacatta
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 756
Transcript exons: 20198730-20198804,20198908-20199180,20199285-20199344,20
199684-20199776,20199863-20200117
CAGTAGATTTTGAGGTTTAATATCTCGATGGCAGACACCAACAACACGATGGATATATGCAAGG
GCACGGCACATCTGATATGCATACAGCTTAACATGCAATATGGGCACACGCTGGTTCATCCGAT
TGTAGTATTTAGCAACACGATAAACTGTCTCTGAGACATATTCAAGTACAAGGTTGAGGTAAAC
TTCACCCCTCTCAGTCGTCGAAAAGAAGTGATGCTTTAGCTGGACCACATTAGGATGGTCAAGC
AGTTGCATTGTTTGGAGCTCTCTGTTCTTATATCTTTTATCTTGCAGAACCTTCTTAATGGCAA
CAGTCTCTCCAGTTTCCAAGCACTTGGCCTGAAAAACTACACCAAATGAACCAGTACCAACTAC
ACGTTCTGCCATGTATGATACCTTCTGCTTTGGCTTCCCATTTTGACCTCCAATTGATGTCACA
ATAATCTGACCTGTTTCTGTTCCATTTGCATTAACAATAACACCTTCAGATTCCTTATCATTAT
GGCCATCAACTTTATCATCACTTATTGTCATCTCATTCATTTCTTTTGGAAGAATATCCGCACC
TGCTTCTTCAGTTCTACCAGGATTCTTACTAGTAGATGTGCTTGCCTCAGCATCTCTATGAGAT
GAAGATGATTCTTGGTCTACGCGCATAGGTTTGTCATCAGTTAGATGTGGCTCAATGACTATAT
CTCCTGCTCCATCCTGATCGAATTTTGGTCTTTTGGTGCCAGAATCACCACC

Genomic sequence CAGTAGATTTTGAGGTTTAATATCTCGATGGCAGACACCAACAACACGATGGATATATGCAAGG
GCACGGCACATCTATGAAAAATAGTAAAACACATTAGAACAAATAATTTCTTTAGAATCATGGA
TTTAACAGTTTGAAATGATCTACAAAGCTAAAATTATAACTTATACAGACCTGATATGCATACA
GCTTAACATGCAATATGGGCACACGCTGGTTCATCCGATTGTAGTATTTAGCAACACGATAAAC
TGTCTCTGAGACATATTCAAGTACAAGGTTGAGGTAAACTTCACCCCTCTCAGTCGTCGAAAAG
AAGTGATGCTTTAGCTGGACCACATTAGGATGGTCAAGCAGTTGCATTGTTTGGAGCTCTCTGT
TCTTATATCTTTTATCTTGCAGAACCTTCTTAATGGCAACAGTCTCTCCAGTTTCCAAGCACTT
GGCCTGTTTGTATCAATAACTGGTCAATAACTTTATGCCCAAATATTGTAAATTTCCATCATGA
CGAGGAGTAGCGATACAGAATGGCAAAATGTGAAATAATATACCTGAAAAACTACACCAAATGA
ACCAGTACCAACTACACGTTCTGCCATGTATGATACCTTCTGTAAAACAATTAGCACACATTAA
TGTTTGACCCTGCCTGTATGTAAAGAATGTAGTATAGCAAACATCCAAGAGAACGCTACTTTTT
CCTAAGCAAAAATACACAACCATCAGGAAGAAATAACACCCGCAATACTGATGGAATGCATTGC
ATCATAGTGTGTTTTTTTTCTTTTTTTTTGGGGGGTGGGGGGGGAGGGGGGTTGAAGGAAGGAA
TCTCCCAGTTTTCAGGGCATGAAGATATTTTCAGTGCTGATGCATTGTATTAATATCCAGCAGA
TCCAGCAGAACGCATGAGAGAGAATGGTGCAGATAAACATAATGGGTTGATGCATCACCTGCTT
TGGCTTCCCATTTTGACCTCCAATTGATGTCACAATAATCTGACCTGTTTCTGTTCCATTTGCA
TTAACAATAACACCTTCAGATTCCTATAATCAGAAAAACTACGACATAAGTAACGAAAGTAGGG
TGGCATTATGTCAAGAAGTGACAAGTCAAATGGTATCAAAATAACCTTATCATTATGGCCATCA
ACTTTATCATCACTTATTGTCATCTCATTCATTTCTTTTGGAAGAATATCCGCACCTGCTTCTT
CAGTTCTACCAGGATTCTTACTAGTAGATGTGCTTGCCTCAGCATCTCTATGAGATGAAGATGA
TTCTTGGTCTACGCGCATAGGTTTGTCATCAGTTAGATGTGGCTCAATGACTATATCTCCTGCT
CCATCCTGATCGAATTTTGGTCTTTTGGTGCCAGAATCACCACC
Conservation Information
Conserved circRNAs NA
PMCS 0.495116718
Functional Information
Coding potential Y
Potential coding position 20200047-20198732(+)
20200029-20198732(-)
20198932-20200062(-)
Potential amino acid sequence MWLNDYISCSILIEFWSFGARITTQ*(+)
MRVDQESSSSHRDAEASTSTSKNPGRTEEAGADILPKEMNEMTISDDKVDGHNDKESEGVIVNA
NGTETGQIIVTSIGGQNGKPKQKVSYMAERVVGTGSFGVVFQAKCLETGETVAIKKVLQDKRYK
NRELQTMQLLDHPNVVQLKHHFFSTTERGEVYLNLVLEYVSETVYRVAKYYNRMNQRVPILHVK
LYAYQMCRALAYIHRVVGVCHRDIKPQNLLGGDSGTKRPKFDQDGAGDIVIEPHLTDDKPMRVD
QESSSSHRDAEASTSTSKNPGRTEEAGADILPKEMNEMTISDDKVDGHNDKESEGVIVNANGTE
TGQIIVTSIGGQNGKPKQKVSYMAERVVGTGSFGVVFQAKCLETGETVAIKKVLQDKRYKNREL
QTMQLLDHPNVVQLKHHFFSTTERGEVYLNLVLEYVSETVYRVAKYYNRMNQRVPILHVKLYAY
QMCRALAYIHRVVGVCHRDIKPQNLLGGDSGTKRPKFDQDGAGDIVIEPHLTDDKPMRVDQESS
SSHRDAEASTSTSKNPGRTEEAGADILPKEMNEMTISDDKVDGHNDKESEGVIVNANGTETGQI
IVTSIGGQNGKPKQKVSYMAERVVGTGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMQ
LLDHPNVVQLKHHFFSTTERGEVYLNLVLEYVSETVYRVAKYYNRMNQRVPILHVKLYAYQMCR
ALAYIHRVVGVCHRDIKPQNLLGGDSGTKRPKFDQDGAGDIVIEPHLTDDKPMRVDQESSSSHR
DAEASTSTSKNPGRTEEAGADILPKEMNEMTISDDKVDGHNDKESEGVIVNANGTETGQIIVTS
IGGQNGKPKQKVSYMAERVVGTGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMQLLDH
PNVVQLKHHFFSTTERGEVYLNLVLEYVSETVYRVAKYYNRMNQRVPILHVKLYAYQMCRALAY
IHRVVGVCHRDIKPQNLL(-)
MLSCMHIRCAVPLHISIVLLVSAIEILNLKIYWVVILAPKDQNSIRMEQEI*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015