Plant Circular RNA Database

Detail information of Os10g0521801_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os10g0521801_circ_g.2
					
						ID in PlantcircBase
						osa_circ_007726
					
						Alias
						Os10circ08187/Os_ciR855
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr10: 20199684-20200117  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ui-circRNA							
									
						Identification method
						CIRCexplorer, CIRI, KNIFE, PcircRNA_finder, SMALT, Segemehl, circRNA_finder, find_circ
					
						Parent gene
						
							Os10g0521801						
					
						Parent gene annotation
						
							Hypothetical gene. (Os10t0521801-00)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os10g0521700_circ_g.1 Os10g0521700_circ_g.2 Os10g0521700_circ_g.3 Os10g0521700_circ_g.4 Os10g0521700_circ_g.5 Os10g0521700_circ_g.6 Os10g0521700_circ_g.7 Os10g0521700_circ_g.8 Os10g0521700_circ_g.9 Os10g0521700_circ_g.10 Os10g0521801_circ_g.1 Os10g0521801_circ_g.3 Os10g0521801_circ_g.4 						
					
						Support reads
						4/29/7
					
						Tissues
						leaf and panicle/root/shoot, root, seed
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os10t0521700-01:2
Os10t0521801-00:2
Os10t0521700-01:2

General Information
CircRNA Name	Os10g0521801_circ_g.2
ID in PlantcircBase	osa_circ_007726
Alias	Os10circ08187/Os_ciR855
Organism	Oryza sativa
Position	chr10: 20199684-20200117 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ui-circRNA
Identification method	CIRCexplorer, CIRI, KNIFE, PcircRNA_finder, SMALT, Segemehl, circRNA_finder, find_circ
Parent gene	Os10g0521801
Parent gene annotation	Hypothetical gene. (Os10t0521801-00)
Parent gene strand	+
Alternative splicing	Os10g0521700_circ_g.1 Os10g0521700_circ_g.2 Os10g0521700_circ_g.3 Os10g0521700_circ_g.4 Os10g0521700_circ_g.5 Os10g0521700_circ_g.6 Os10g0521700_circ_g.7 Os10g0521700_circ_g.8 Os10g0521700_circ_g.9 Os10g0521700_circ_g.10 Os10g0521801_circ_g.1 Os10g0521801_circ_g.3 Os10g0521801_circ_g.4
Support reads	4/29/7
Tissues	leaf and panicle/root/shoot, root, seed
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os10t0521700-01:2 Os10t0521801-00:2 Os10t0521700-01:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CTACGCGCATAGGTTTGTCATCAGTTAGATGTGGCTCAATGACTATATCTCCTGCTCCATCCTG
ATCGAATTTTGGTCTTTTGGTGCCAGAATCACCACCctgctttggcttcccattttgacctcca
attgatgtcacaataatctgacctgtttctgttccatttgcattaacaataacaccttcagatt
cctataat

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 168
Transcript exons: 20199684-20199752,20200019-20200117
CTGCTTTGGCTTCCCATTTTGACCTCCAATTGATGTCACAATAATCTGACCTGTTTCTGTTCCA
TTTGCTACGCGCATAGGTTTGTCATCAGTTAGATGTGGCTCAATGACTATATCTCCTGCTCCAT
CCTGATCGAATTTTGGTCTTTTGGTGCCAGAATCACCACC
Transcript length: 206
Transcript exons: 20199684-20199710,20199938-20200038,20200040-20200117
CTGCTTTGGCTTCCCATTTTGACCTCCTGCTTCTTCAGTTCTACCAGGATTCTTACTAGTAGAT
GTGCTTGCCTCAGCATCTCTATGAGATGAAGATGATTCTTGGTCTACGCGCATAGGTTTGTCAT
AGTTAGATGTGGCTCAATGACTATATCTCCTGCTCCATCCTGATCGAATTTTGGTCTTTTGGTG
CCAGAATCACCACC
Transcript length: 227
Transcript exons: 20199684-20199743,20199934-20200034,20200052-20200117
CTGCTTTGGCTTCCCATTTTGACCTCCAATTGATGTCACAATAATCTGACCTGTTTCTGTCACC
TGCTTCTTCAGTTCTACCAGGATTCTTACTAGTAGATGTGCTTGCCTCAGCATCTCTATGAGAT
GAAGATGATTCTTGGTCTACGCGCATAGGTTTGCTCAATGACTATATCTCCTGCTCCATCCTGA
TCGAATTTTGGTCTTTTGGTGCCAGAATCACCACC
Transcript length: 251
Transcript exons: 20199684-20199779,20199955-20200055,20200064-20200117
CTGCTTTGGCTTCCCATTTTGACCTCCAATTGATGTCACAATAATCTGACCTGTTTCTGTTCCA
TTTGCATTAACAATAACACCTTCAGATTCCTACAGGATTCTTACTAGTAGATGTGCTTGCCTCA
GCATCTCTATGAGATGAAGATGATTCTTGGTCTACGCGCATAGGTTTGTCATCAGTTAGATGTG
GCTCAATCTCCTGCTCCATCCTGATCGAATTTTGGTCTTTTGGTGCCAGAATCACCACC
Transcript length: 348
Transcript exons: 20199684-20199776,20199863-20200117
CTGCTTTGGCTTCCCATTTTGACCTCCAATTGATGTCACAATAATCTGACCTGTTTCTGTTCCA
TTTGCATTAACAATAACACCTTCAGATTCCTTATCATTATGGCCATCAACTTTATCATCACTTA
TTGTCATCTCATTCATTTCTTTTGGAAGAATATCCGCACCTGCTTCTTCAGTTCTACCAGGATT
CTTACTAGTAGATGTGCTTGCCTCAGCATCTCTATGAGATGAAGATGATTCTTGGTCTACGCGC
ATAGGTTTGTCATCAGTTAGATGTGGCTCAATGACTATATCTCCTGCTCCATCCTGATCGAATT
TTGGTCTTTTGGTGCCAGAATCACCACC
						
					

						Genomic sequence
						
							CTGCTTTGGCTTCCCATTTTGACCTCCAATTGATGTCACAATAATCTGACCTGTTTCTGTTCCA
TTTGCATTAACAATAACACCTTCAGATTCCTATAATCAGAAAAACTACGACATAAGTAACGAAA
GTAGGGTGGCATTATGTCAAGAAGTGACAAGTCAAATGGTATCAAAATAACCTTATCATTATGG
CCATCAACTTTATCATCACTTATTGTCATCTCATTCATTTCTTTTGGAAGAATATCCGCACCTG
CTTCTTCAGTTCTACCAGGATTCTTACTAGTAGATGTGCTTGCCTCAGCATCTCTATGAGATGA
AGATGATTCTTGGTCTACGCGCATAGGTTTGTCATCAGTTAGATGTGGCTCAATGACTATATCT
CCTGCTCCATCCTGATCGAATTTTGGTCTTTTGGTGCCAGAATCACCACC
						
					

			
		

Sequences
Splice junction sequence	CTACGCGCATAGGTTTGTCATCAGTTAGATGTGGCTCAATGACTATATCTCCTGCTCCATCCTG ATCGAATTTTGGTCTTTTGGTGCCAGAATCACCACCctgctttggcttcccattttgacctcca attgatgtcacaataatctgacctgtttctgttccatttgcattaacaataacaccttcagatt cctataat
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 168 Transcript exons: 20199684-20199752,20200019-20200117 CTGCTTTGGCTTCCCATTTTGACCTCCAATTGATGTCACAATAATCTGACCTGTTTCTGTTCCA TTTGCTACGCGCATAGGTTTGTCATCAGTTAGATGTGGCTCAATGACTATATCTCCTGCTCCAT CCTGATCGAATTTTGGTCTTTTGGTGCCAGAATCACCACC Transcript length: 206 Transcript exons: 20199684-20199710,20199938-20200038,20200040-20200117 CTGCTTTGGCTTCCCATTTTGACCTCCTGCTTCTTCAGTTCTACCAGGATTCTTACTAGTAGAT GTGCTTGCCTCAGCATCTCTATGAGATGAAGATGATTCTTGGTCTACGCGCATAGGTTTGTCAT AGTTAGATGTGGCTCAATGACTATATCTCCTGCTCCATCCTGATCGAATTTTGGTCTTTTGGTG CCAGAATCACCACC Transcript length: 227 Transcript exons: 20199684-20199743,20199934-20200034,20200052-20200117 CTGCTTTGGCTTCCCATTTTGACCTCCAATTGATGTCACAATAATCTGACCTGTTTCTGTCACC TGCTTCTTCAGTTCTACCAGGATTCTTACTAGTAGATGTGCTTGCCTCAGCATCTCTATGAGAT GAAGATGATTCTTGGTCTACGCGCATAGGTTTGCTCAATGACTATATCTCCTGCTCCATCCTGA TCGAATTTTGGTCTTTTGGTGCCAGAATCACCACC Transcript length: 251 Transcript exons: 20199684-20199779,20199955-20200055,20200064-20200117 CTGCTTTGGCTTCCCATTTTGACCTCCAATTGATGTCACAATAATCTGACCTGTTTCTGTTCCA TTTGCATTAACAATAACACCTTCAGATTCCTACAGGATTCTTACTAGTAGATGTGCTTGCCTCA GCATCTCTATGAGATGAAGATGATTCTTGGTCTACGCGCATAGGTTTGTCATCAGTTAGATGTG GCTCAATCTCCTGCTCCATCCTGATCGAATTTTGGTCTTTTGGTGCCAGAATCACCACC Transcript length: 348 Transcript exons: 20199684-20199776,20199863-20200117 CTGCTTTGGCTTCCCATTTTGACCTCCAATTGATGTCACAATAATCTGACCTGTTTCTGTTCCA TTTGCATTAACAATAACACCTTCAGATTCCTTATCATTATGGCCATCAACTTTATCATCACTTA TTGTCATCTCATTCATTTCTTTTGGAAGAATATCCGCACCTGCTTCTTCAGTTCTACCAGGATT CTTACTAGTAGATGTGCTTGCCTCAGCATCTCTATGAGATGAAGATGATTCTTGGTCTACGCGC ATAGGTTTGTCATCAGTTAGATGTGGCTCAATGACTATATCTCCTGCTCCATCCTGATCGAATT TTGGTCTTTTGGTGCCAGAATCACCACC
Genomic sequence	CTGCTTTGGCTTCCCATTTTGACCTCCAATTGATGTCACAATAATCTGACCTGTTTCTGTTCCA TTTGCATTAACAATAACACCTTCAGATTCCTATAATCAGAAAAACTACGACATAAGTAACGAAA GTAGGGTGGCATTATGTCAAGAAGTGACAAGTCAAATGGTATCAAAATAACCTTATCATTATGG CCATCAACTTTATCATCACTTATTGTCATCTCATTCATTTCTTTTGGAAGAATATCCGCACCTG CTTCTTCAGTTCTACCAGGATTCTTACTAGTAGATGTGCTTGCCTCAGCATCTCTATGAGATGA AGATGATTCTTGGTCTACGCGCATAGGTTTGTCATCAGTTAGATGTGGCTCAATGACTATATCT CCTGCTCCATCCTGATCGAATTTTGGTCTTTTGGTGCCAGAATCACCACC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_002912* osi_circ_008616 						
					
						PMCS
						0.770036899

Conservation Information
Conserved circRNAs	osi_circ_002912* osi_circ_008616
PMCS	0.770036899

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							20200047-20199713(+)
20200029-20199686(-)
20199702-20200062(-)
						
						Potential amino acid sequence
						
							MWLNDYISCSILIEFWSFGARITTLLWLPILTSN*(+)
MRVDQESSSSHRDAEASTSTSKNPGRTEEAGADILPKEMNEMTISDDKVDGHNDKESEGVIVNA
NGTETGQIIVTSIGGQNGKPKQGGDSGTKRPKFDQDGAGDIVIEPHLTDDKPMRVDQESSSSHR
DAEASTSTSKNPGRTEEAGADILPKEMNEMTISDDKVDGHNDKESEGVIVNANGTETGQIIVTS
IGGQNGKPKQGGDSGTKRPKFDQDGAGDIVIEPHLTDDKPMRVDQESSSSHRDAEASTSTSKNP
GRTEEAGADILPKEMNEMTISDDKVDGHNDKESEGVIVNANGTETGQIIVTSIGGQNGKPKQGG
DSGTKRPKFDQDGAGDIVIEPHLTDDKPMRVDQESSSSHRDAEASTSTSKNPGRTEEAGADILP
KEMNEMTISDDKVDGHNDKESEGVIVNANGTETGQIIVTSIGGQNGKPKQ(-)
MGSQSRVVILAPKDQNSIRMEQEI*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	20200047-20199713(+) 20200029-20199686(-) 20199702-20200062(-)
Potential amino acid sequence	MWLNDYISCSILIEFWSFGARITTLLWLPILTSN(+) MRVDQESSSSHRDAEASTSTSKNPGRTEEAGADILPKEMNEMTISDDKVDGHNDKESEGVIVNA NGTETGQIIVTSIGGQNGKPKQGGDSGTKRPKFDQDGAGDIVIEPHLTDDKPMRVDQESSSSHR DAEASTSTSKNPGRTEEAGADILPKEMNEMTISDDKVDGHNDKESEGVIVNANGTETGQIIVTS IGGQNGKPKQGGDSGTKRPKFDQDGAGDIVIEPHLTDDKPMRVDQESSSSHRDAEASTSTSKNP GRTEEAGADILPKEMNEMTISDDKVDGHNDKESEGVIVNANGTETGQIIVTSIGGQNGKPKQGG DSGTKRPKFDQDGAGDIVIEPHLTDDKPMRVDQESSSSHRDAEASTSTSKNPGRTEEAGADILP KEMNEMTISDDKVDGHNDKESEGVIVNANGTETGQIIVTSIGGQNGKPKQ(-) MGSQSRVVILAPKDQNSIRMEQEI(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Lu et al., 2015;Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os10g0521801_circ_g.2

Address

Any questions?

Supported by