Detail information of Os10g0521801_circ_g.2


General Information
CircRNA Name Os10g0521801_circ_g.2
ID in PlantcircBase osa_circ_007726
Alias Os10circ08187/Os_ciR855
Organism Oryza sativa
Position chr10: 20199684-20200117  JBrowse»
Reference genome IRGSP-1.0.38
Type   ui-circRNA
Identification method CIRCexplorer, CIRI, KNIFE, PcircRNA_finder, SMALT, Segemehl, circRNA_finder, find_circ
Parent gene Os10g0521801
Parent gene annotation Hypothetical gene. (Os10t0521801-00)
Parent gene strand +
Alternative splicing Os10g0521700_circ_g.1 Os10g0521700_circ_g.2 Os10g0521700_circ_g.3 Os10g0521700_circ_g.4 Os10g0521700_circ_g.5 Os10g0521700_circ_g.6 Os10g0521700_circ_g.7 Os10g0521700_circ_g.8 Os10g0521700_circ_g.9 Os10g0521700_circ_g.10 Os10g0521801_circ_g.1 Os10g0521801_circ_g.3 Os10g0521801_circ_g.4
Support reads 4/29/7
Tissues leaf and panicle/root/shoot, root, seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os10t0521700-01:2
Os10t0521801-00:2
Os10t0521700-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTACGCGCATAGGTTTGTCATCAGTTAGATGTGGCTCAATGACTATATCTCCTGCTCCATCCTG
ATCGAATTTTGGTCTTTTGGTGCCAGAATCACCACCctgctttggcttcccattttgacctcca
attgatgtcacaataatctgacctgtttctgttccatttgcattaacaataacaccttcagatt
cctataat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 168
Transcript exons: 20199684-20199752,20200019-20200117
CTGCTTTGGCTTCCCATTTTGACCTCCAATTGATGTCACAATAATCTGACCTGTTTCTGTTCCA
TTTGCTACGCGCATAGGTTTGTCATCAGTTAGATGTGGCTCAATGACTATATCTCCTGCTCCAT
CCTGATCGAATTTTGGTCTTTTGGTGCCAGAATCACCACC

Transcript length: 206
Transcript exons: 20199684-20199710,20199938-20200038,20200040-20200117
CTGCTTTGGCTTCCCATTTTGACCTCCTGCTTCTTCAGTTCTACCAGGATTCTTACTAGTAGAT
GTGCTTGCCTCAGCATCTCTATGAGATGAAGATGATTCTTGGTCTACGCGCATAGGTTTGTCAT
AGTTAGATGTGGCTCAATGACTATATCTCCTGCTCCATCCTGATCGAATTTTGGTCTTTTGGTG
CCAGAATCACCACC

Transcript length: 227
Transcript exons: 20199684-20199743,20199934-20200034,20200052-20200117
CTGCTTTGGCTTCCCATTTTGACCTCCAATTGATGTCACAATAATCTGACCTGTTTCTGTCACC
TGCTTCTTCAGTTCTACCAGGATTCTTACTAGTAGATGTGCTTGCCTCAGCATCTCTATGAGAT
GAAGATGATTCTTGGTCTACGCGCATAGGTTTGCTCAATGACTATATCTCCTGCTCCATCCTGA
TCGAATTTTGGTCTTTTGGTGCCAGAATCACCACC

Transcript length: 251
Transcript exons: 20199684-20199779,20199955-20200055,20200064-20200117
CTGCTTTGGCTTCCCATTTTGACCTCCAATTGATGTCACAATAATCTGACCTGTTTCTGTTCCA
TTTGCATTAACAATAACACCTTCAGATTCCTACAGGATTCTTACTAGTAGATGTGCTTGCCTCA
GCATCTCTATGAGATGAAGATGATTCTTGGTCTACGCGCATAGGTTTGTCATCAGTTAGATGTG
GCTCAATCTCCTGCTCCATCCTGATCGAATTTTGGTCTTTTGGTGCCAGAATCACCACC

Transcript length: 348
Transcript exons: 20199684-20199776,20199863-20200117
CTGCTTTGGCTTCCCATTTTGACCTCCAATTGATGTCACAATAATCTGACCTGTTTCTGTTCCA
TTTGCATTAACAATAACACCTTCAGATTCCTTATCATTATGGCCATCAACTTTATCATCACTTA
TTGTCATCTCATTCATTTCTTTTGGAAGAATATCCGCACCTGCTTCTTCAGTTCTACCAGGATT
CTTACTAGTAGATGTGCTTGCCTCAGCATCTCTATGAGATGAAGATGATTCTTGGTCTACGCGC
ATAGGTTTGTCATCAGTTAGATGTGGCTCAATGACTATATCTCCTGCTCCATCCTGATCGAATT
TTGGTCTTTTGGTGCCAGAATCACCACC

Genomic sequence CTGCTTTGGCTTCCCATTTTGACCTCCAATTGATGTCACAATAATCTGACCTGTTTCTGTTCCA
TTTGCATTAACAATAACACCTTCAGATTCCTATAATCAGAAAAACTACGACATAAGTAACGAAA
GTAGGGTGGCATTATGTCAAGAAGTGACAAGTCAAATGGTATCAAAATAACCTTATCATTATGG
CCATCAACTTTATCATCACTTATTGTCATCTCATTCATTTCTTTTGGAAGAATATCCGCACCTG
CTTCTTCAGTTCTACCAGGATTCTTACTAGTAGATGTGCTTGCCTCAGCATCTCTATGAGATGA
AGATGATTCTTGGTCTACGCGCATAGGTTTGTCATCAGTTAGATGTGGCTCAATGACTATATCT
CCTGCTCCATCCTGATCGAATTTTGGTCTTTTGGTGCCAGAATCACCACC
Conservation Information
Conserved circRNAs osi_circ_002912* osi_circ_008616
PMCS 0.770036899
Functional Information
Coding potential Y
Potential coding position 20200047-20199713(+)
20200029-20199686(-)
20199702-20200062(-)
Potential amino acid sequence MWLNDYISCSILIEFWSFGARITTLLWLPILTSN*(+)
MRVDQESSSSHRDAEASTSTSKNPGRTEEAGADILPKEMNEMTISDDKVDGHNDKESEGVIVNA
NGTETGQIIVTSIGGQNGKPKQGGDSGTKRPKFDQDGAGDIVIEPHLTDDKPMRVDQESSSSHR
DAEASTSTSKNPGRTEEAGADILPKEMNEMTISDDKVDGHNDKESEGVIVNANGTETGQIIVTS
IGGQNGKPKQGGDSGTKRPKFDQDGAGDIVIEPHLTDDKPMRVDQESSSSHRDAEASTSTSKNP
GRTEEAGADILPKEMNEMTISDDKVDGHNDKESEGVIVNANGTETGQIIVTSIGGQNGKPKQGG
DSGTKRPKFDQDGAGDIVIEPHLTDDKPMRVDQESSSSHRDAEASTSTSKNPGRTEEAGADILP
KEMNEMTISDDKVDGHNDKESEGVIVNANGTETGQIIVTSIGGQNGKPKQ(-)
MGSQSRVVILAPKDQNSIRMEQEI*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA