Detail information of BGIOSGA031532_circ_g.1


General Information
CircRNA Name BGIOSGA031532_circ_g.1
ID in PlantcircBase osi_circ_008612
Alias Chr10:22036600_22037711(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 19164183-19165295  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA031532
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA031532_circ_g.2 BGIOSGA031532_circ_g.3 BGIOSGA031532_circ_g.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-TA
Number of exons covered BGIOSGA031532-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGATATCAATTGCTGTGGTATACTCTGTAGCTCCAAATATTAGTTCAGGAGCCCTATAATACCG
CGAGCAAATGTATGATATGTTAGGTTCACCAGGAACccagcagctgagaagtcgaacaagggtg
gtaatgatcgtccatttgacaagcaggtcttgggatcccgcagttcatcaaagaatggatgagc
acaagcat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCAGCAGCTGAGAAGTCGAACAAGGGTGGTAATGATCGTCCATTTGACAAGCAGGTCTTGGGAT
CCCGCAGTTCATCAAAGAATGGATGAGCACAAGCATCAACCTGGAAGAACAGCCAAATACGTTT
AATCAGAACAGTAATCAAGATTTTTTTTGTTTCTTTGTTTCCCAATCTAGGGCTAATTAGTAGA
TACAAACATAATATATCATATGTAGTACAACACTTTCTTATGAGGAAATTAGATTATTGTGCTC
ATGATGATCCACCTAATACCGATCTGGTTCAATAATTAGTTAAAATGGCTCAAATCCAATATTA
GTCTTACAGCTGTGCAACGCAAATTTGGCGAGTACTGCAGCAACCTTGACACAAGATCAACAGC
TTCAGGTGGCATGCGCTTACCAAAAAGCTGCAGTTGGACAAATTTTGTGAGAAGGTTACATCAG
TGTAGAACTAAAGTGCTATGGAATTAGAGATCCACCAACCTTGTGCCATGGATGAGCTTTTATC
TGAGGGAATTTGAATTCAGAATAGTTTGGATTCATGCACCTGATTTCTTCTCTAGTTGGTGTAC
CCAAAATCTATAATAAGAAAAAAAACAAGAAATGGATCAGTCCACAGACCTAAATTACTGTCTC
TAATGGATGACAGGAGATAGAAACCTTTATTATTTCCACCAGTTGATCAACACCACTTTCTCCA
GGGAACAGAGGCTGCAATTGTCCATATTCGGAAAAAAGATCAGCCAAAGCAGGAAAGAGCCTTG
CAGCACAGCATCCATTATTAACCCCCAACCCCCATAAAATGAAGTACTTGCATTCAAATGGAAA
TGCTGAGTTATGTTACTTATTTTTTGGTAATGGTGTGACTTAAGATAACAGTAAGTTCGATACA
AAATTATTCAATCAAGTATATCCTCGGGTCATGAACTTGACTAGAAAAAAACTGAGCTGCTAGA
ATGATTCTATACCTGACCAATCAGAAGCTCAGCTAGTACACAACCAACAGACCAGATATCAATT
GCTGTGGTATACTCTGTAGCTCCAAATATTAGTTCAGGAGCCCTATAATACCGCGAGCAAATGT
ATGATATGTTAGGTTCACCAGGAAC
Conservation Information
Conserved circRNAs osa_circ_007715 zma_circ_003083
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021