Plant Circular RNA Database

Detail information of Os10g0521700_circ_g.9

			
						 General Information
					
						CircRNA Name
						Os10g0521700_circ_g.9
					
						ID in PlantcircBase
						osa_circ_007723
					
						Alias
						Os_ciR798
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr10: 20198214-20199344  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, find_circ
					
						Parent gene
						
							Os10g0521700						
					
						Parent gene annotation
						
							Similar to Shaggy-related protein kinase NtK-1 (EC 2.7.1.-). (Os
10t0521700-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os10g0521700_circ_g.1 Os10g0521700_circ_g.2 Os10g0521700_circ_g.3 Os10g0521700_circ_g.4 Os10g0521700_circ_g.5 Os10g0521700_circ_g.6 Os10g0521700_circ_g.7 Os10g0521700_circ_g.8 Os10g0521700_circ_g.10 Os10g0521801_circ_g.1 Os10g0521801_circ_g.2 Os10g0521801_circ_g.3 Os10g0521801_circ_g.4 						
					
						Support reads
						28/5
					
						Tissues
						root/shoot, root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os10t0521700-01:5

General Information
CircRNA Name	Os10g0521700_circ_g.9
ID in PlantcircBase	osa_circ_007723
Alias	Os_ciR798
Organism	Oryza sativa
Position	chr10: 20198214-20199344 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, find_circ
Parent gene	Os10g0521700
Parent gene annotation	Similar to Shaggy-related protein kinase NtK-1 (EC 2.7.1.-). (Os 10t0521700-01)
Parent gene strand	-
Alternative splicing	Os10g0521700_circ_g.1 Os10g0521700_circ_g.2 Os10g0521700_circ_g.3 Os10g0521700_circ_g.4 Os10g0521700_circ_g.5 Os10g0521700_circ_g.6 Os10g0521700_circ_g.7 Os10g0521700_circ_g.8 Os10g0521700_circ_g.10 Os10g0521801_circ_g.1 Os10g0521801_circ_g.2 Os10g0521801_circ_g.3 Os10g0521801_circ_g.4
Support reads	28/5
Tissues	root/shoot, root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os10t0521700-01:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GGAGTAGCGATACAGAATGGCAAAATGTGAAATAATATACCTGAAAAACTACACCAAATGAACC
AGTACCAACTACACGTTCTGCCATGTATGATACCTTctgaccaatcagaagctcagctagtaca
caaccaacagaccagatatcaattgctgtggtatactctgtagctccaaatattagttcaggag
ccctataa

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 110
Transcript exons: 20198214-20198292,20199314-20199344
CTGACCAATCAGAAGCTCAGCTAGTACACAACCAACAGACCAGATATCAATTGCTGTGGTATAC
TCTGTAGCTCCAAATCAACTACACGTTCTGCCATGTATGATACCTT
Transcript length: 606
Transcript exons: 20198214-20198354,20198429-20198485,20198730-20198804,20
198908-20199180,20199285-20199344
CTGACCAATCAGAAGCTCAGCTAGTACACAACCAACAGACCAGATATCAATTGCTGTGGTATAC
TCTGTAGCTCCAAATATTAGTTCAGGAGCCCTATAATACCGCGAGCAAATGTATGATATGTTAG
GTTCACCAGGAACCAATTTCTTAGCACTTCCAAAATCACAAAGCTTCAGTTGATGTGTATGAGG
ATTGACCAGTAGATTTTGAGGTTTAATATCTCGATGGCAGACACCAACAACACGATGGATATAT
GCAAGGGCACGGCACATCTGATATGCATACAGCTTAACATGCAATATGGGCACACGCTGGTTCA
TCCGATTGTAGTATTTAGCAACACGATAAACTGTCTCTGAGACATATTCAAGTACAAGGTTGAG
GTAAACTTCACCCCTCTCAGTCGTCGAAAAGAAGTGATGCTTTAGCTGGACCACATTAGGATGG
TCAAGCAGTTGCATTGTTTGGAGCTCTCTGTTCTTATATCTTTTATCTTGCAGAACCTTCTTAA
TGGCAACAGTCTCTCCAGTTTCCAAGCACTTGGCCTGAAAAACTACACCAAATGAACCAGTACC
AACTACACGTTCTGCCATGTATGATACCTT
						
					

						Genomic sequence
						
							CTGACCAATCAGAAGCTCAGCTAGTACACAACCAACAGACCAGATATCAATTGCTGTGGTATAC
TCTGTAGCTCCAAATATTAGTTCAGGAGCCCTATAATACCGCGAGCAAATGTATGATATGTTAG
GTTCACCAGGAACCTGAAATGGAGTGTCTGCATTGTCAAATACATGTGCAACACAGAATCAACA
TGCTAGCAGGACAAGAAGCATACCAATTTCTTAGCACTTCCAAAATCACAAAGCTTCAGTTGAT
GTGTATGAGGATTGACCTGAAAAATCGATCAACTTGCAATGAGACAATTGCTTGTACAGCAGGT
TTACTTATATCACAACACATAAACAGCTGAAAATATTGCAGGCAATCATGCTTTTGCACAAGCT
GCAAATGCATGTTTCAATCTTAAACTCCATCATCTGTTTACAAGTACCCAAATAGTAAAAAAGG
GAAAAGAACACTTGCAAAGCATGCCCTGAGGAGGGGTGCCTGATAAAAATGAGTCTCATGATAC
ATACCAGTAGATTTTGAGGTTTAATATCTCGATGGCAGACACCAACAACACGATGGATATATGC
AAGGGCACGGCACATCTATGAAAAATAGTAAAACACATTAGAACAAATAATTTCTTTAGAATCA
TGGATTTAACAGTTTGAAATGATCTACAAAGCTAAAATTATAACTTATACAGACCTGATATGCA
TACAGCTTAACATGCAATATGGGCACACGCTGGTTCATCCGATTGTAGTATTTAGCAACACGAT
AAACTGTCTCTGAGACATATTCAAGTACAAGGTTGAGGTAAACTTCACCCCTCTCAGTCGTCGA
AAAGAAGTGATGCTTTAGCTGGACCACATTAGGATGGTCAAGCAGTTGCATTGTTTGGAGCTCT
CTGTTCTTATATCTTTTATCTTGCAGAACCTTCTTAATGGCAACAGTCTCTCCAGTTTCCAAGC
ACTTGGCCTGTTTGTATCAATAACTGGTCAATAACTTTATGCCCAAATATTGTAAATTTCCATC
ATGACGAGGAGTAGCGATACAGAATGGCAAAATGTGAAATAATATACCTGAAAAACTACACCAA
ATGAACCAGTACCAACTACACGTTCTGCCATGTATGATACCTT
						
					

			
		

Sequences
Splice junction sequence	GGAGTAGCGATACAGAATGGCAAAATGTGAAATAATATACCTGAAAAACTACACCAAATGAACC AGTACCAACTACACGTTCTGCCATGTATGATACCTTctgaccaatcagaagctcagctagtaca caaccaacagaccagatatcaattgctgtggtatactctgtagctccaaatattagttcaggag ccctataa
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 110 Transcript exons: 20198214-20198292,20199314-20199344 CTGACCAATCAGAAGCTCAGCTAGTACACAACCAACAGACCAGATATCAATTGCTGTGGTATAC TCTGTAGCTCCAAATCAACTACACGTTCTGCCATGTATGATACCTT Transcript length: 606 Transcript exons: 20198214-20198354,20198429-20198485,20198730-20198804,20 198908-20199180,20199285-20199344 CTGACCAATCAGAAGCTCAGCTAGTACACAACCAACAGACCAGATATCAATTGCTGTGGTATAC TCTGTAGCTCCAAATATTAGTTCAGGAGCCCTATAATACCGCGAGCAAATGTATGATATGTTAG GTTCACCAGGAACCAATTTCTTAGCACTTCCAAAATCACAAAGCTTCAGTTGATGTGTATGAGG ATTGACCAGTAGATTTTGAGGTTTAATATCTCGATGGCAGACACCAACAACACGATGGATATAT GCAAGGGCACGGCACATCTGATATGCATACAGCTTAACATGCAATATGGGCACACGCTGGTTCA TCCGATTGTAGTATTTAGCAACACGATAAACTGTCTCTGAGACATATTCAAGTACAAGGTTGAG GTAAACTTCACCCCTCTCAGTCGTCGAAAAGAAGTGATGCTTTAGCTGGACCACATTAGGATGG TCAAGCAGTTGCATTGTTTGGAGCTCTCTGTTCTTATATCTTTTATCTTGCAGAACCTTCTTAA TGGCAACAGTCTCTCCAGTTTCCAAGCACTTGGCCTGAAAAACTACACCAAATGAACCAGTACC AACTACACGTTCTGCCATGTATGATACCTT
Genomic sequence	CTGACCAATCAGAAGCTCAGCTAGTACACAACCAACAGACCAGATATCAATTGCTGTGGTATAC TCTGTAGCTCCAAATATTAGTTCAGGAGCCCTATAATACCGCGAGCAAATGTATGATATGTTAG GTTCACCAGGAACCTGAAATGGAGTGTCTGCATTGTCAAATACATGTGCAACACAGAATCAACA TGCTAGCAGGACAAGAAGCATACCAATTTCTTAGCACTTCCAAAATCACAAAGCTTCAGTTGAT GTGTATGAGGATTGACCTGAAAAATCGATCAACTTGCAATGAGACAATTGCTTGTACAGCAGGT TTACTTATATCACAACACATAAACAGCTGAAAATATTGCAGGCAATCATGCTTTTGCACAAGCT GCAAATGCATGTTTCAATCTTAAACTCCATCATCTGTTTACAAGTACCCAAATAGTAAAAAAGG GAAAAGAACACTTGCAAAGCATGCCCTGAGGAGGGGTGCCTGATAAAAATGAGTCTCATGATAC ATACCAGTAGATTTTGAGGTTTAATATCTCGATGGCAGACACCAACAACACGATGGATATATGC AAGGGCACGGCACATCTATGAAAAATAGTAAAACACATTAGAACAAATAATTTCTTTAGAATCA TGGATTTAACAGTTTGAAATGATCTACAAAGCTAAAATTATAACTTATACAGACCTGATATGCA TACAGCTTAACATGCAATATGGGCACACGCTGGTTCATCCGATTGTAGTATTTAGCAACACGAT AAACTGTCTCTGAGACATATTCAAGTACAAGGTTGAGGTAAACTTCACCCCTCTCAGTCGTCGA AAAGAAGTGATGCTTTAGCTGGACCACATTAGGATGGTCAAGCAGTTGCATTGTTTGGAGCTCT CTGTTCTTATATCTTTTATCTTGCAGAACCTTCTTAATGGCAACAGTCTCTCCAGTTTCCAAGC ACTTGGCCTGTTTGTATCAATAACTGGTCAATAACTTTATGCCCAAATATTGTAAATTTCCATC ATGACGAGGAGTAGCGATACAGAATGGCAAAATGTGAAATAATATACCTGAAAAACTACACCAA ATGAACCAGTACCAACTACACGTTCTGCCATGTATGATACCTT

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_008613 						
					
						PMCS
						0.422635868

Conservation Information
Conserved circRNAs	osi_circ_008613
PMCS	0.422635868

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							20199303-20198281(+)
20199334-20198216(-)
						
						Potential amino acid sequence
						
							MNQYQLHVLPCMIPSDQSEAQLVHNQQTRYQLLWYTL*(+)
MAERVVGTGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMQLLDHPNVVQLKHHFFSTT
ERGEVYLNLVLEYVSETVYRVAKYYNRMNQRVPILHVKLYAYQMCRALAYIHRVVGVCHRDIKP
QNLLVNPHTHQLKLCDFGSAKKLVPGEPNISYICSRYYRAPELIFGATEYTTAIDIWSVGCVLA
ELLIGQKVSYMAERVVGTGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMQLLDHPNVV
QLKHHFFSTTERGEVYLNLVLEYVSETVYRVAKYYNRMNQRVPILHVKLYAYQMCRALAYIHRV
VGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKKLVPGEPNISYICSRYYRAPELIFGATEYTTAI
DIWSVGCVLAELLIGQKVSYMAERVVGTGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQT
MQLLDHPNVVQLKHHFFSTTERGEVYLNLVLEYVSETVYRVAKYYNRMNQRVPILHVKLYAYQM
CRALAYIHRVVGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKKLVPGEPNISYICSRYYRAPELI
FGATEYTTAIDIWSVGCVLAELLIGQKVSYMAERVVGTGSFGVVFQAKCLETGETVAIKKVLQD
KRYKNRELQTMQLLDHPNVVQLKHHFFSTTERGEVYLNLVLEYVSETVYRVAKYYNRMNQRVPI
LHVKLYAYQMCRALAYIHRVVGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKKLVPGEPNISYIC
SRYYRAPELIFGATEYTTAIDIWSVGCVLAELLIGQ(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	20199303-20198281(+) 20199334-20198216(-)
Potential amino acid sequence	MNQYQLHVLPCMIPSDQSEAQLVHNQQTRYQLLWYTL*(+) MAERVVGTGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMQLLDHPNVVQLKHHFFSTT ERGEVYLNLVLEYVSETVYRVAKYYNRMNQRVPILHVKLYAYQMCRALAYIHRVVGVCHRDIKP QNLLVNPHTHQLKLCDFGSAKKLVPGEPNISYICSRYYRAPELIFGATEYTTAIDIWSVGCVLA ELLIGQKVSYMAERVVGTGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMQLLDHPNVV QLKHHFFSTTERGEVYLNLVLEYVSETVYRVAKYYNRMNQRVPILHVKLYAYQMCRALAYIHRV VGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKKLVPGEPNISYICSRYYRAPELIFGATEYTTAI DIWSVGCVLAELLIGQKVSYMAERVVGTGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQT MQLLDHPNVVQLKHHFFSTTERGEVYLNLVLEYVSETVYRVAKYYNRMNQRVPILHVKLYAYQM CRALAYIHRVVGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKKLVPGEPNISYICSRYYRAPELI FGATEYTTAIDIWSVGCVLAELLIGQKVSYMAERVVGTGSFGVVFQAKCLETGETVAIKKVLQD KRYKNRELQTMQLLDHPNVVQLKHHFFSTTERGEVYLNLVLEYVSETVYRVAKYYNRMNQRVPI LHVKLYAYQMCRALAYIHRVVGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKKLVPGEPNISYIC SRYYRAPELIFGATEYTTAIDIWSVGCVLAELLIGQ(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os10g0521700_circ_g.9

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