Detail information of Zm00001d033850_circ_g.6


General Information
CircRNA Name Zm00001d033850_circ_g.6
ID in PlantcircBase zma_circ_006914
Alias zma_circ_0000531
Organism Zea mays
Position chr1: 275841905-275845748  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d033850
Parent gene annotation alpha tubulin1
Parent gene strand +
Alternative splicing Zm00001d033850_circ_g.1 Zm00001d033850_circ_g.2 Zm00001d033850_circ_g.3 Zm00001d033850_circ_g.4 Zm00001d033850_circ_g.5 Zm00001d033850_circ_g.7 Zm00001d033850_circ_g.8 Zm00001d033850_circ_g.9 Zm00001d033850_circ_g.10 Zm00001d033850_circ_g.11 Zm00001d033850_circ_g.12 Zm00001d033850_circ_g.13 Zm00001d033850_circ_g.14 Zm00001d033850_circ_g.15 Zm00001d033850_circ_g.16 Zm00001d033850_circ_g.17 Zm00001d033850_circ_g.18 Zm00001d033850_circ_g.19 Zm00001d033850_circ_g.20 Zm00001d033850_circ_g.21
Support reads NA
Tissues leaf, root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Zm00001d033850_T004:2
Zm00001d033850_T008:1
Zm00001d033850_T017:2
Zm00001d033850_T020:2
Zm00001d033850_T016:1
Zm00001d033850_T015:2
Zm00001d033850_T022:2
Zm00001d033850_T007:2
Zm00001d033850_T014:3
Zm00001d033850_T001:3
Zm00001d033850_T021:2
Zm00001d033850_T019:2
Zm00001d033850_T006:2
Zm00001d033850_T005:1
Zm00001d033850_T003:3
Zm00001d033850_T009:4
Zm00001d033850_T023:2
Zm00001d033850_T013:3
Zm00001d033850_T011:3
Zm00001d033850_T010:3
Zm00001d033850_T018:2
Zm00001d033850_T002:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGTGATGATGCTTTCAACACCTTCTTCAGTGAGACTGGTGCTGGGAAGCACGTGCCCCGTGCT
GTTTTTGTTGACCTTGAACCCACTGTCATCGATGAGgtgaggactggcacctaccgccagctct
tccaccctgagcagcttatcagtggcaaggaggatgcagccaacaacttcgcccgtggtcacta
caccagta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGAGGACTGGCACCTACCGCCAGCTCTTCCACCCTGAGCAGCTTATCAGTGGCAAGGAGGATG
CAGCCAACAACTTCGCCCGTGGTCACTACACCAGTAAGTAACCTGATCTGACTGTCAGTTTACA
ATGCTCCTGGATATTTGCTTTGTAATGAACATCTTATTTAAACTTGATTGCTTGTCTTGCAGTT
GGCAAGGAGATTGTTGACCTGTGCCTTGATCGCATCAGGAAGCTTGCCGACAACTGCACTGGTC
TCCAGGGCTTCCTCGTCTTCAACGCTGTTGGCGGAGGAACAGGCTCTGGCCTTGGTTCCCTCCT
CCTGGAGCGTCTGTCTGTTGACTACGGCAAGAAGTCTAAGCTTGGTTTCACTGTGTACCCATCC
CCCCAAGTTTCGACCTCAGTGGTTGAGCCATACAACAGTGTCCTGTCCACCCACTCCCTCCTTG
AGCACACTGATGTGGCTATCCTGCTGGACAACGAGGCCATCTATGACATCTGCCGCCGTTCCCT
TGACATTGAGCGCCCAACCTACACCAACCTCAACAGGCTTGTGTCCCAGGTACTGTCTTGGTTT
ACAGCCTAAGCATTAAGTAAATGGTCTGTAATCTGGGCTTTTCTCTTTAACCATCAGTTGTTCC
TGTCGTTGTACAGGTCATCTCATCCCTGACTGCCTCCCTGAGGTTCGATGGTGCTCTTAACGTG
GATGTGAATGAGTTCCAGACCAACTTGGTGCCCTACCCGAGGATCCACTTCATGCTTTCCTCCT
ATGCTCCAGTCATCTCTGCTGAGAAGGCCTACCACGAGCAGCTGTCTGTGGCCGAGATCACCAA
CAGCGCCTTCGAGCCATCCTCCATGATGGCCAAGTGCGATCCCCGCCATGGTAAGTACATGGCC
TGCTGCCTCATGTACCGTGGTGATGTGGTCCCCAAGGATGTGAATGCTGCTGTGGCCACCATCA
AGACCAAGCGCACCATCCAGTTTGTGGACTGGTGCCCAACTGGCTTTAAGTGCGGCATTAACTA
CCAGCCTCCAAGTGTGGTGCCTGGTGGTGACCTGGCCAAGGTGCAGCGCGCTGTGTGCATGATC
TCCAACTCCACCAGTGTTGTGGAGGTGTTCTCCCGCATCGACCACAAGTTCGACCTCATGTACG
CCAAGCGTGCCTTCGTGCACTGGTATGTCGGTGAGGGTATGGAGGAGGGCGAGTTCTCTGAGGC
CCGTGAGGATCTGGCAGCGCTCGAGAAGGACTACGAGGAGGTTGGTGCTGAGTTTGATGAGGGT
GAGGAAGGTGATGATGGTGATGAGTACTAGAAGTATCCTGATGCGGTCATCGTCAGGCTTGTGT
GCTGCTCTTGTCCCCGTTGTGGTTTGCAACACCTGATGTTGTAAGACTTTCTGGTTATGTCCGC
CCCGCTGTGCCACTGGGTTATTAAGAACGTCGTTATGGATGGTTGTCTACACTACATTATTGCT
TCTCGATATTGGAAAACTGTTATGCGCCTCGGTGGATTGTGTTGTTGTCGTAATGTCATCACTC
ATACGCCGCTGGGAATTTTGAGGCCTGTCAAGCATCAGGATTGCGTTATGAGTTAAATGCTTCA
GCGACGTTTAAACTTGTCTAAGGTGCCATCTAGATCATGAACTTGTCAAGGGTTGCCACTTAGA
TCATGAACTTCGTAAATATGTTTTTGGATCCAAAATATGTTTTTGATCCTTAAGGGTGTGTTTG
GTTGAATGTATAAGAAGGGATGAAAGAGGAATGTCATAATTTCTATAGTGTTTGGTTGAGAGAC
AAGTGAGGACGAGATAAATACCTAAGAAGGGATGAAAGAGGAATGCCACAATTTCTATAGTGTT
TGGTTCAGAGACAAGTGACAATTTCTATAGTGTTTGGTTGAGAGACAAGTGAGGGCGAGTAAAT
ACCGCAATAATTTTTTGGTGGCACCGAATTTTTGTGAAGTTGTATACATTTTGGACACCAATAG
AAAATAGAATTAAAAAAATATAAAACTGGTGTCATTTAAATCAGTGTCACGTTATTAAAATTTA
AAACTATCAACTAAAATTGTCTAATGGATTATTTATGTGGTTTTGTAAAGTTGTGGAGATTAAA
CAACCAGTTTTGAAGATAAGTAAGTGAAATAGTCAAATATAAAACTAGGTTAAGAATTTAGGTA
CACTTACGACTAGTTTAGATGCCGCAAAATGGGTTAAATTTTTCTTCTTATTCAAAATTAAATA
ATAAGGTGAATTTAACTACTCTAATTTCCTCTGTTTTTTTAACTCCCAAACTATCCCTTATTCG
TAATAATAGGAAGCGGTGACAGTTTGGTGGTGAGAACTCAGGTATCAACAAAAAGAAATGTATT
TTTGAAATATTTTGCTCGTAATGCCCTGCAAGGTTTCGATTTCCGTAGCCAGTACATGTCCGCT
CTTGACCCAGGTACTGTGTCACGAACCAACCGACCGTTGAACGGACGTGGAGCACGAACCATTA
AAACAATCAAAATCTCAGGGGCTCAAACGAAAAAACACCGCCCCCTTCCCTCGCTTGCGCTGGC
ACTCCATCGTGGGCTCGTGGCCCAGGCTGTCGTTCTGTTCTATAAAGCGAGACGAGTGGGAGCA
GGCGTAACCCTAATTGAGCATCGCAGAGATAGGCGTCTTCGTACTCGCCTACCTCCGCGGCTCA
AACCTTTCCCCCTTCTCCCAATTCCTTCCGCCGGCCGCCGCTCCACCCGTACGACGACACCATG
AGGGAGTGCATTTCGATCCACATCGGCCAGGCCGGTATCCAGGTCGGAAACGCGTGCTGGGAGC
TGTACTGCCTTGAGCATGGCATTCAGGTAACGATCCGTCATTCCCTCCCCCGTTCTCCCTCTGT
TGAGGTAGATCTATAATCGGTATGGGGGTTTCATCGCTAATATTTGCTGGATTTTTGGTGGGGC
TGAATCCGCCGGAGGAAATGACGTTTCAAATCGGTAGATCTGTACGGATCTGGATGCATGTAAT
GGTGGCTACCCGGATCCGGGTTTGCTAGGTCTGATCCGGAGAACTGGTGTCTGAGCGAGATTGC
AATTGTTTTTGAACTGGAATTTTGATACGTAGAATTTGAATAGGGATCACCCGAAACCCACGTG
CGTGGTAGATCTGAGTGCCCAGAATTCGTTTAAATGTACTGTCAGTTTGGATCTTTGAATTTTC
ATAGGCTAAGTTCCGTATTGCCTGTTGATATGTGAGCCTTGATGTACAAATACAGACTATAGTA
TGTTTAGTGTTAATTTGATGTGAGCCTTGATGAATTTTCACAGGCTAAGTTCCATGCCCACAAT
GCATCCATTCATACTGTTATTAATTCTGTAAAAAAAACGAATACACGTCACTCTTAGGCACCTT
AACCCAATTTGCATTTTTCTGTTTAAATCTGTTAGAAATGGGATAGAGACTGGCATGTTGTTAT
GTAGTCCTAGCTGTTATTAGCTTTATCTAGGACTAAATGCTGTTCACATATTTCAAGTGTTTGC
AATCGGAGATTCAATCATGGCTCCCTAGGACATTTGAATCGTGTGTCATAGTTTGAAATATGAG
ATTCAGGCCTGTGTTACCTTAAGATCATGCATCTGTCTGGTCTACTACTGTAGATGGCATGTAT
TTTTTACATAGACTCCTTAAGTCGCATATTAACACTACTACATTTGTGTTTTGTTCAGGCTGAC
GGTCAGATGCCCGGTGACAAGACCATTGGGGGAGGTGATGATGCTTTCAACACCTTCTTCAGTG
AGACTGGTGCTGGGAAGCACGTGCCCCGTGCTGTTTTTGTTGACCTTGAACCCACTGTCATCGA
TGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.94192051
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b