Detail information of Zm00001d033850_circ_g.8


General Information
CircRNA Name Zm00001d033850_circ_g.8
ID in PlantcircBase zma_circ_006915
Alias zma_circ_0000532
Organism Zea mays
Position chr1: 275842095-275845845  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method find_circ
Parent gene Zm00001d033850
Parent gene annotation alpha tubulin1
Parent gene strand +
Alternative splicing Zm00001d033850_circ_g.1 Zm00001d033850_circ_g.2 Zm00001d033850_circ_g.3 Zm00001d033850_circ_g.4 Zm00001d033850_circ_g.5 Zm00001d033850_circ_g.6 Zm00001d033850_circ_g.7 Zm00001d033850_circ_g.9 Zm00001d033850_circ_g.10 Zm00001d033850_circ_g.11 Zm00001d033850_circ_g.12 Zm00001d033850_circ_g.13 Zm00001d033850_circ_g.14 Zm00001d033850_circ_g.15 Zm00001d033850_circ_g.16 Zm00001d033850_circ_g.17 Zm00001d033850_circ_g.18 Zm00001d033850_circ_g.19 Zm00001d033850_circ_g.20 Zm00001d033850_circ_g.21
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d033850_T017:2
Zm00001d033850_T020:2
Zm00001d033850_T014:2
Zm00001d033850_T022:2
Zm00001d033850_T003:2
Zm00001d033850_T005:1
Zm00001d033850_T001:2
Zm00001d033850_T011:2
Zm00001d033850_T009:3
Zm00001d033850_T010:2
Zm00001d033850_T018:2
Zm00001d033850_T023:2
Zm00001d033850_T019:2
Zm00001d033850_T021:2
Zm00001d033850_T002:2
Zm00001d033850_T007:2
Zm00001d033850_T008:1
Zm00001d033850_T013:2
Zm00001d033850_T015:2
Zm00001d033850_T006:2
Zm00001d033850_T004:2
Zm00001d033850_T016:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGGTGAGAACTGGCACCTACCGCCAGCTCTTCCACCCTGAGCAGCTCATCAGTGGGAAGGAGG
ATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAttggcaaggagattgttgacctgtgcct
tgatcgcatcaggaagcttgccgacaactgcactggtctccagggcttcctcgtcttcaacgct
gttggcgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTGGCAAGGAGATTGTTGACCTGTGCCTTGATCGCATCAGGAAGCTTGCCGACAACTGCACTGG
TCTCCAGGGCTTCCTCGTCTTCAACGCTGTTGGCGGAGGAACAGGCTCTGGCCTTGGTTCCCTC
CTCCTGGAGCGTCTGTCTGTTGACTACGGCAAGAAGTCTAAGCTTGGTTTCACTGTGTACCCAT
CCCCCCAAGTTTCGACCTCAGTGGTTGAGCCATACAACAGTGTCCTGTCCACCCACTCCCTCCT
TGAGCACACTGATGTGGCTATCCTGCTGGACAACGAGGCCATCTATGACATCTGCCGCCGTTCC
CTTGACATTGAGCGCCCAACCTACACCAACCTCAACAGGCTTGTGTCCCAGGTACTGTCTTGGT
TTACAGCCTAAGCATTAAGTAAATGGTCTGTAATCTGGGCTTTTCTCTTTAACCATCAGTTGTT
CCTGTCGTTGTACAGGTCATCTCATCCCTGACTGCCTCCCTGAGGTTCGATGGTGCTCTTAACG
TGGATGTGAATGAGTTCCAGACCAACTTGGTGCCCTACCCGAGGATCCACTTCATGCTTTCCTC
CTATGCTCCAGTCATCTCTGCTGAGAAGGCCTACCACGAGCAGCTGTCTGTGGCCGAGATCACC
AACAGCGCCTTCGAGCCATCCTCCATGATGGCCAAGTGCGATCCCCGCCATGGTAAGTACATGG
CCTGCTGCCTCATGTACCGTGGTGATGTGGTCCCCAAGGATGTGAATGCTGCTGTGGCCACCAT
CAAGACCAAGCGCACCATCCAGTTTGTGGACTGGTGCCCAACTGGCTTTAAGTGCGGCATTAAC
TACCAGCCTCCAAGTGTGGTGCCTGGTGGTGACCTGGCCAAGGTGCAGCGCGCTGTGTGCATGA
TCTCCAACTCCACCAGTGTTGTGGAGGTGTTCTCCCGCATCGACCACAAGTTCGACCTCATGTA
CGCCAAGCGTGCCTTCGTGCACTGGTATGTCGGTGAGGGTATGGAGGAGGGCGAGTTCTCTGAG
GCCCGTGAGGATCTGGCAGCGCTCGAGAAGGACTACGAGGAGGTTGGTGCTGAGTTTGATGAGG
GTGAGGAAGGTGATGATGGTGATGAGTACTAGAAGTATCCTGATGCGGTCATCGTCAGGCTTGT
GTGCTGCTCTTGTCCCCGTTGTGGTTTGCAACACCTGATGTTGTAAGACTTTCTGGTTATGTCC
GCCCCGCTGTGCCACTGGGTTATTAAGAACGTCGTTATGGATGGTTGTCTACACTACATTATTG
CTTCTCGATATTGGAAAACTGTTATGCGCCTCGGTGGATTGTGTTGTTGTCGTAATGTCATCAC
TCATACGCCGCTGGGAATTTTGAGGCCTGTCAAGCATCAGGATTGCGTTATGAGTTAAATGCTT
CAGCGACGTTTAAACTTGTCTAAGGTGCCATCTAGATCATGAACTTGTCAAGGGTTGCCACTTA
GATCATGAACTTCGTAAATATGTTTTTGGATCCAAAATATGTTTTTGATCCTTAAGGGTGTGTT
TGGTTGAATGTATAAGAAGGGATGAAAGAGGAATGTCATAATTTCTATAGTGTTTGGTTGAGAG
ACAAGTGAGGACGAGATAAATACCTAAGAAGGGATGAAAGAGGAATGCCACAATTTCTATAGTG
TTTGGTTCAGAGACAAGTGACAATTTCTATAGTGTTTGGTTGAGAGACAAGTGAGGGCGAGTAA
ATACCGCAATAATTTTTTGGTGGCACCGAATTTTTGTGAAGTTGTATACATTTTGGACACCAAT
AGAAAATAGAATTAAAAAAATATAAAACTGGTGTCATTTAAATCAGTGTCACGTTATTAAAATT
TAAAACTATCAACTAAAATTGTCTAATGGATTATTTATGTGGTTTTGTAAAGTTGTGGAGATTA
AACAACCAGTTTTGAAGATAAGTAAGTGAAATAGTCAAATATAAAACTAGGTTAAGAATTTAGG
TACACTTACGACTAGTTTAGATGCCGCAAAATGGGTTAAATTTTTCTTCTTATTCAAAATTAAA
TAATAAGGTGAATTTAACTACTCTAATTTCCTCTGTTTTTTTAACTCCCAAACTATCCCTTATT
CGTAATAATAGGAAGCGGTGACAGTTTGGTGGTGAGAACTCAGGTATCAACAAAAAGAAATGTA
TTTTTGAAATATTTTGCTCGTAATGCCCTGCAAGGTTTCGATTTCCGTAGCCAGTACATGTCCG
CTCTTGACCCAGGTACTGTGTCACGAACCAACCGACCGTTGAACGGACGTGGAGCACGAACCAT
TAAAACAATCAAAATCTCAGGGGCTCAAACGAAAAAACACCGCCCCCTTCCCTCGCTTGCGCTG
GCACTCCATCGTGGGCTCGTGGCCCAGGCTGTCGTTCTGTTCTATAAAGCGAGACGAGTGGGAG
CAGGCGTAACCCTAATTGAGCATCGCAGAGATAGGCGTCTTCGTACTCGCCTACCTCCGCGGCT
CAAACCTTTCCCCCTTCTCCCAATTCCTTCCGCCGGCCGCCGCTCCACCCGTACGACGACACCA
TGAGGGAGTGCATTTCGATCCACATCGGCCAGGCCGGTATCCAGGTCGGAAACGCGTGCTGGGA
GCTGTACTGCCTTGAGCATGGCATTCAGGTAACGATCCGTCATTCCCTCCCCCGTTCTCCCTCT
GTTGAGGTAGATCTATAATCGGTATGGGGGTTTCATCGCTAATATTTGCTGGATTTTTGGTGGG
GCTGAATCCGCCGGAGGAAATGACGTTTCAAATCGGTAGATCTGTACGGATCTGGATGCATGTA
ATGGTGGCTACCCGGATCCGGGTTTGCTAGGTCTGATCCGGAGAACTGGTGTCTGAGCGAGATT
GCAATTGTTTTTGAACTGGAATTTTGATACGTAGAATTTGAATAGGGATCACCCGAAACCCACG
TGCGTGGTAGATCTGAGTGCCCAGAATTCGTTTAAATGTACTGTCAGTTTGGATCTTTGAATTT
TCATAGGCTAAGTTCCGTATTGCCTGTTGATATGTGAGCCTTGATGTACAAATACAGACTATAG
TATGTTTAGTGTTAATTTGATGTGAGCCTTGATGAATTTTCACAGGCTAAGTTCCATGCCCACA
ATGCATCCATTCATACTGTTATTAATTCTGTAAAAAAAACGAATACACGTCACTCTTAGGCACC
TTAACCCAATTTGCATTTTTCTGTTTAAATCTGTTAGAAATGGGATAGAGACTGGCATGTTGTT
ATGTAGTCCTAGCTGTTATTAGCTTTATCTAGGACTAAATGCTGTTCACATATTTCAAGTGTTT
GCAATCGGAGATTCAATCATGGCTCCCTAGGACATTTGAATCGTGTGTCATAGTTTGAAATATG
AGATTCAGGCCTGTGTTACCTTAAGATCATGCATCTGTCTGGTCTACTACTGTAGATGGCATGT
ATTTTTTACATAGACTCCTTAAGTCGCATATTAACACTACTACATTTGTGTTTTGTTCAGGCTG
ACGGTCAGATGCCCGGTGACAAGACCATTGGGGGAGGTGATGATGCTTTCAACACCTTCTTCAG
TGAGACTGGTGCTGGGAAGCACGTGCCCCGTGCTGTTTTTGTTGACCTTGAACCCACTGTCATC
GATGAGGTGAGAACTGGCACCTACCGCCAGCTCTTCCACCCTGAGCAGCTCATCAGTGGGAAGG
AGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA
Conservation Information
Conserved circRNAs NA
PMCS 1.083286497
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b