Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os04g0609700_circ_g.5 |
ID in PlantcircBase | osa_circ_025160 |
Alias | Os04circ13232/Os_ciR911 |
Organism | Oryza sativa |
Position | chr4: 30895096-30899907 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, SMALT, Segemehl, find_circ |
Parent gene | Os04g0609700 |
Parent gene annotation |
Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os04 t0609700-01);Similar to H0702G05.10 protein. (Os04t0609700-02) |
Parent gene strand | - |
Alternative splicing | Os04g0609700_circ_g.1 Os04g0609700_circ_g.2 Os04g0609700_circ_g.3 Os04g0609700_circ_g.4 Os04g0609700_circ_g.6 Os04g0609700_circ_g.7 Os04g0609700_circ_g.8 Os04g0609700_circ_g.9 Os04g0609700_circ_igg.1 Os04g0609700_circ_g.2 |
Support reads | 3/30/2 |
Tissues | leaf and panicle/root/shoot, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os04t0609700-01:15 |
Conservation Information | |
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Conserved circRNAs | osi_circ_005712* osi_circ_014763 |
PMCS | 0.219014952 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
30899282-30895149(+) 30899865-30899331(-) |
Potential amino acid sequence |
MCSMTSHQLIPQSKVVSDNQGEHVENNQNNEATESSPPLCYRFDTCETPHQTLSIHDLTQLLGR SIIFILPTFVNLFY*(+) MCQICNTEEEKTLLLHCSGCSRHVHPGCLTPPWTGVLTDDWSCYTCKKLEGEENEQDAHVADFS QRYDAAVEKKKKILDMIRSLDLPNNPLDDIIDQLGGPDNVAEITGRRGMLIRASDGKGVVYQAR NAKEVSMEMINMHEKQQFMDGKKLISIISEAGSAGVSLHADRRAKNQRRRVHITLELPWSADRA IQQFGRTHRSNQTSAPQYRLLFTNLGGEKRFASIVAKRLESLGALTQGDRRAGPSLSAFNYDSN YGKKALTIMYRGIMEQDSFPVVPPGCSDNQSSIQEFIAEAKAALVSVGIIRDAVVCNGKVAGKL SGRIVDSDMHDVARFLNRLLGLAPKIQNRLFDLFTSILDVVLHNARIEGQLDSGIVDIKAKNVE MKESPKTVHIDSLSGASTVLFTFTIDRGVTWETAKSMLDERQKDGAGSSNDGFYESKREWMGGR HFILAFEGSIEGMYKIIRPAIGEALREMPLTELKSKYRKVSSIEKVNKGWQDEYDASSKQLSQI MDRQSLMRSFTCVKSVTQRRRRLCCFIVLVVLDMFTLVV*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Lu et al., 2015;Ye et al., 2015;Chu et al., 2017 |