Detail information of Os04g0609700_circ_g.5


General Information
CircRNA Name Os04g0609700_circ_g.5
ID in PlantcircBase osa_circ_025160
Alias Os04circ13232/Os_ciR911
Organism Oryza sativa
Position chr4: 30895096-30899907  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, SMALT, Segemehl, find_circ
Parent gene Os04g0609700
Parent gene annotation Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os04
t0609700-01);Similar to H0702G05.10 protein. (Os04t0609700-02)
Parent gene strand -
Alternative splicing Os04g0609700_circ_g.1 Os04g0609700_circ_g.2 Os04g0609700_circ_g.3 Os04g0609700_circ_g.4 Os04g0609700_circ_g.6 Os04g0609700_circ_g.7 Os04g0609700_circ_g.8 Os04g0609700_circ_g.9 Os04g0609700_circ_igg.1 Os04g0609700_circ_g.2
Support reads 3/30/2
Tissues leaf and panicle/root/shoot, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0609700-01:15
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTACTAAATAATAAGCCATAAGAGTCACCTCCTCTGTGTTACAGATTTGACACATGTGAAACT
CCTCATCAGACTCTGTCGATCCATGATCTGACTCAGctgcttggacgaagcatcatattcatct
tgccaacctttgttaaccttttctattgatgacactttcctgtacttgcttttcagttctgtta
aaggcatt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1568
Transcript exons: 30895096-30895198,30895375-30895428,30895891-30896009,30
896151-30896228,30896311-30896434,30896504-30896615,3089
6706-30896823,30896911-30896998,30897072-30897167,308977
63-30897869,30897962-30898097,30898177-30898274,30899042
-30899135,30899220-30899389,30899837-30899907
CTGCTTGGACGAAGCATCATATTCATCTTGCCAACCTTTGTTAACCTTTTCTATTGATGACACT
TTCCTGTACTTGCTTTTCAGTTCTGTTAAAGGCATTTCTCTTAATGCTTCACCAATAGCAGGTC
GAATTATTTTATACATCCCTTCGATTGAGCCTTCAAAAGCAAGTATGAAATGCCTTCCTCCCAT
CCATTCCCTTTTGGACTCGTAAAACCCATCATTAGAAGAACCAGCACCATCCTTTTGCCTCTCA
TCAAGCATTGATTTTGCCGTCTCCCAAGTAACTCCTCGGTCAATGGTGAAAGTAAAAAGTACAG
TTGACGCGCCTGACAAGCTATCAATGTGAACGGTCTTGGGTGATTCTTTCATTTCAACATTTTT
AGCTTTTATATCAACGATTCCAGAATCCAGCTGCCCTTCTATTCGTGCATTGTGCAAAACAACA
TCAAGTATACTTGTAAAAAGATCAAATAACCTATTCTGGATTTTCGGAGCCAGTCCCAAAAGGC
GGTTAAGAAAACGAGCAACATCATGCATATCTGAGTCAACAATCCGACCAGAAAGCTTCCCAGC
AACTTTTCCATTGCACACTACAGCATCCCTGATAATCCCAACTGATACTAGAGCAGCTTTTGCT
TCAGCAATGAACTCTTGGATGCTAGATTGATTGTCAGAACACCCCGGAGGAACAACTGGAAAAG
AATCCTGCTCCATTATTCCTCTATACATGATGGTTAGGGCTTTTTTCCCATAATTGCTGTCGTA
GTTAAAAGCACTCAGAGAAGGTCCAGCCCTGCGATCTCCTTGCGTTAAAGCTCCTAGAGACTCC
AGTCTTTTTGCTACGATTGATGCAAATCGCTTTTCACCACCAAGATTTGTAAAGAGAAGCCTAT
ATTGTGGTGCAGAAGTTTGATTAGAACGATGAGTTCTCCCAAACTGTTGTATTGCACGATCTGC
ACTCCAAGGGAGCTCAAGTGTTATGTGTACTCTTCTTCTCTGGTTTTTTGCCCTTCTATCAGCA
TGCAGCGAAACGCCAGCTGATCCTGCTTCAGATATAATAGATATTAGTTTTTTGCCATCCATGA
ACTGCTGTTTTTCATGCATATTGATCATCTCCATCGACACTTCTTTCGCATTCCGCGCCTGATA
AACAACGCCTTTTCCGTCAGAAGCTCTTATTAGCATACCACGCCGTCCAGTTATTTCTGCAACA
TTGTCAGGGCCTCCTAGCTGATCAATGATGTCATCAAGAGGATTGTTAGGGAGATCCAAAGAAC
GTATCATATCCAAAATCTTCTTTTTTTTCTCTACTGCAGCATCATACCTCTGTGAAAAATCAGC
TACATGAGCATCTTGTTCATTTTCCTCTCCTTCTAACTTCTTGCATGTGTAGCATGACCAGTCA
TCAGTTAATACCCCAGTCCAAGGTGGTGTCAGACAACCAGGGTGAACATGTCGAGAACAACCAG
AACAATGAAGCAACAGAGTCTTCTCCTCCTCTGTGTTACAGATTTGACACATGTGAAACTCCTC
ATCAGACTCTGTCGATCCATGATCTGACTCAG

Genomic sequence CTGCTTGGACGAAGCATCATATTCATCTTGCCAACCTTTGTTAACCTTTTCTATTGATGACACT
TTCCTGTACTTGCTTTTCAGTTCTGTTAAAGGCATTTCTCTGCAATAGAAACATGGAGTGTAAC
CAAAAAAAAAATTAAATAGCATTTTTTATATAAACATATCGTACCTGCTAGGCTACTAGACATG
GTGATTAAACATGAAGCTGTATGCAGTATAAATTTTTCTTACAATAGGTTACACCAGAAAAAAT
ATATAATAATGAACTGCAGATACCTTAATGCTTCACCAATAGCAGGTCGAATTATTTTATACAT
CCCTTCGATTGAGCTGGTTCACAAACAAAATGGAACAAAGAGTCAGGTCATAGCATCACATTTC
AAATCAACTATTTTTGTTGACAAAAGGAAAAACTAGTACTAGCACATTGTATAGTTTCCACTGC
TTTATAGAAATACGAAAATGCTCCTCAGTTGCTAGCAAATAAAGATTTTTTTTCATTTATCTAA
TAAGCGTAGTTTGCAGTTCTCAACTAAATAATGAGGTGCCTTTTCATTTTATTTATTTATTTTG
CTAATCACATTTGGCCAGAATTCATTCAGCGTTAGATTGATTAATATTCCAATTCAGTCTTTTT
CCTCGATACACACGGTATCAATTGCATGGTAAATTTCTACTACATTATTTATCTATTCCTCTAT
TTGAATAAGGGTTTTCAGTTTTTAGCAATGCTAAGTTGCTAACAGATGGCTGATAAGAACTAAA
GAATAAATAAATGATTATCCAACATACCCTTCAAAAGCAAGTATGAAATGCCTTCCTCCCATCC
ATTCCCTTTTGGACTCGTAAAACCCATCATTAGAAGAACCAGCACCATCCTTTTGCCTCTCATC
AAGCATTGATTTTGCCGTCTTTACACGTTCACAAAAGCAATTGAGCAAAAACCATAGAAGTTGC
AGTTTTACAAGAAACATGGACTGTACTTTTAAATACAGCTACAACCATGTCTCTCAAGGAAAAA
CAGAATTCGACTACCAAAGTTGTATGTTTACCTCCCAAGTAACTCCTCGGTCAATGGTGAAAGT
AAAAAGTACAGTTGACGCGCCTGACAAGCTATCAATGTGAACGGTCTGCAAGGAGAAAATGCAT
TAAGAATCTACAGATTAGAAGCACAGAGCAGACAAAGCAAAAAGTTTTCTAAAAGAGCATTGCC
TTGGGTGATTCTTTCATTTCAACATTTTTAGCTTTTATATCAACGATTCCAGAATCCAGCTGCC
CTTCTATTCGTGCATTGTGCAAAACAACATCAAGTATACTTGTAAAAAGATCAAATAACCTGTT
ACATAGAGAATGTGTAAGTATAGTCCAACCATCTCAAGTTACAGGATACTGCATGGCATCTCAC
CTATTCTGGATTTTCGGAGCCAGTCCCAAAAGGCGGTTAAGAAAACGAGCAACATCATGCATAT
CTGAGTCAACAATCCGACCAGAAAGCTTCCCAGCAACTTTTCCATTGCCTGAGGAAAAACGTTA
AATGAGTCCAACACAGTCACAAACACTAAGGTATGGAAGAAAGAAAGTGTCTAATTGTTTCTGG
GTAAACTTACACACTACAGCATCCCTGATAATCCCAACTGATACTAGAGCAGCTTTTGCTTCAG
CAATGAACTCTTGGATGCTAGATTGATTGTCAGAACACCCCGGAGGAACAACTGGAAAAGAATC
CTGGTCATCTTGAAAGTAACTCTTAGAATGGTGAATAAAGCATGAAAAGGAAAACATATTCAAA
AACTATAGTGTAATTATATAAACCTGCTCCATTATTCCTCTATACATGATGGTTAGGGCTTTTT
TCCCATAATTGCTGTCGTAGTTAAAAGCACTCAGAGAAGGTCCAGCCCTGCAGAAGTAGAAGTC
AGTTAAGATATGATTTAGCTGATGTCGATACAAAATTGGTTGAAATCAGCAAAAACCTGCGATC
TCCTTGCGTTAAAGCTCCTAGAGACTCCAGTCTTTTTGCTACGATTGATGCAAATCGCTTTTCA
CCACCAAGATTTGTAAAGAGAAGCCTGCAATTGAGATTCCAAATTTATTTTTAAGATATACATC
TATATAGCAAATGTACATCCATGCCATGTGAACATGTGAAATTAATAGTAAAATAGCGAGTCTG
GATAACCAATATAAAGTAGAATGACTATTATTTTTCCATCCACATCAAATAACCACTTTGCCTC
ATTGTCTCAGCATTTAAGTATTACATGAATATATTGTGTACACAGCACTGGTCCCCAATTCCCA
CCTTCATGCTAGATATTTTTAAAGACTACATAAATAAATTCATGAGACTTCAAATTTCTTTCGT
CAGACAGACACGTCACTAATTGTTACAGGTTCCAGCAGACAGCCATCACATATTATAGCTACAT
ACAATACACTGAAACCAGCAATTTTATCTATATATGTTTGATTTGTGCTTACTTCACTGCTTGA
CAAATTTCAGTCTGCCCTAGCTCTTCATTCATGACTCGTATACAGTACCAGAAGACAATATAAC
GGAAATCCCTATTCTAGCAATTTGTTTTGCTGAATGGCAATACGGACAATCGAAACACAGACCT
ACAAGAAGCTAGAGATGGCTCATATGAGAAATATAAAGCATACCTATATTGTGGTGCAGAAGTT
TGATTAGAACGATGAGTTCTCCCAAACTGTTGTATTGCACGATCTGCACTCCAAGGGAGCTCAA
GTGTTATGTGTACTCTTCTTCTCTGCAAAGTTCATTAAGAAGTTTCATCAAAATTACAACAGAC
CAACCTCTGGTGTATTTGAAACATGTGGATAAAATGAAGAATCATAAAACCTGGTTTTTTGCCC
TTCTATCAGCATGCAGCGAAACGCCAGCTGATCCTGCTTCAGATATAATAGATATTAGTTTTTT
GCCATCCATGAACTGCTGTTTTTCATGCATATTGATCATCTCCATCGACACTTCTTTCCTACAT
ACAGAAAATGCACACGTATGGGATTAGTTGAACCAGAGAAACATAATGCAAAATCACAAGTAAG
CTATCTCACGCATTCCGCGCCTGATAAACAACGCCTTTTCCGTCAGAAGCTCTTATTAGCATAC
CACGCCGTCCAGTTATTTCTGCAACATTGTCAGGGCCTCCTAGCTGCAAAATCCAAATAAAATG
GAAAAATATTAATTATATGTATGGTCCAATAATACTAGAACGAGTTAAAATTAAGATAGGGAAA
AAGATTGTAAAATAATTCAACACAAATTAAACACTGATAAACATATGTCAGGACAATGATTACA
AGCTCATTGCATAATCTTCAGCCAAAATGGGTCTGAAAATGGGAGAACTAACTAATAAACAGGG
ATTGAATATCTATGCAGGAACAATTTAGTTGAGATATGACAGTGGTGCTTAATTCACAAGAGCT
TACTCAAGAAATAAACATATAATTTGACATATCTGACCACCCTTTCTCCTGCTCCAAAATGCAA
CATCATTAACCTACACCTTATTGTGATAATCATCTAACAGACATCCAGAAGATAAGAAAATGGA
AGAGATGTCATGTATATATGAGTTAATGGGTAACAACTCCTAGCTAGCTGCATAAGAATCTTTG
TAATATCTTGATGTCCAAATTTCTTCTACAGCCCAGCCCTGCTGAGCAGGCCTATGCAAGTCTA
GCAGTTCACTTGGATTTGCATCCCAACTTCAGCAAAAAGGATTAGCCCAAAATTGTAATGGTTG
GTCCTCAAACATAATATGCTAGTACTACAGTACTACCACTACTCTGAACTTTGAAATCTGCCCC
TTTCACATCAGTTAACTGTGCAAACAGATGTCAATGCAAGCTCAAAGTTAAAAAATAACCACAG
ATTCAATTATCAACATTTCCAGGTGATGTAAGCCAATATTACCTGATCAATGATGTCATCAAGA
GGATTGTTAGGGAGATCCAAAGAACGTATCATATCCAAAATCTTCTTTTTTTTCTCTACTGCAG
CATCATACCTGACAGCAAGGCACAGGACAAGTATTTATATAATTGGGTGTGGGCATTTTATGGG
GATCTTGATTTGTCAAACGCACACGTACCTCTGTGAAAAATCAGCTACATGAGCATCTTGTTCA
TTTTCCTCTCCTTCTAACTTCTTGCATGTGTAGCATGACCAGTCATCAGTTAATACCCCAGTCC
AAGGTGGTGTCAGACAACCAGGGTGAACATGTCGAGAACAACCAGAACAATGAAGCAACAGAGT
CTTCTCCTGAAAATTAAGATATTGTTGTGTAAAAACTATAAATGACAGTGCACTTCCAAAGAGA
TTTAACATTAACGGACAATATATTTTCCTGTAAGCATTCTACAAATAATAATCAATTGTGGTAT
GGTTACCAGCTTGAACTATAGGAAATCGTAATCAAATACTAAATAGTTTCAGCAAATACAAAAG
AAAGAATTGCACATACAGAAAATGTAACCAGCTAGCAAAAAGAACTGAGGTCAAAGAACATGGC
ACAGACCGAATGTAACATTATTGTATATACTACCTCCGTCCCAAAATATAGCAACTTCTAGCTA
TGTATCTGGACAAACATTTATCTAGATACATAGCCAAAAGTTTCTAAATTTTGGGATGGAGAGA
GTAATAATTTTTGGTATTACGGATCTGTATATGACATTATTGTACTAAATAATAAGCCATAAGA
GTCACCTCCTCTGTGTTACAGATTTGACACATGTGAAACTCCTCATCAGACTCTGTCGATCCAT
GATCTGACTCAG
Conservation Information
Conserved circRNAs osi_circ_005712* osi_circ_014763
PMCS 0.219014952
Functional Information
Coding potential Y
Potential coding position 30899282-30895149(+)
30899865-30899331(-)
Potential amino acid sequence MCSMTSHQLIPQSKVVSDNQGEHVENNQNNEATESSPPLCYRFDTCETPHQTLSIHDLTQLLGR
SIIFILPTFVNLFY*(+)
MCQICNTEEEKTLLLHCSGCSRHVHPGCLTPPWTGVLTDDWSCYTCKKLEGEENEQDAHVADFS
QRYDAAVEKKKKILDMIRSLDLPNNPLDDIIDQLGGPDNVAEITGRRGMLIRASDGKGVVYQAR
NAKEVSMEMINMHEKQQFMDGKKLISIISEAGSAGVSLHADRRAKNQRRRVHITLELPWSADRA
IQQFGRTHRSNQTSAPQYRLLFTNLGGEKRFASIVAKRLESLGALTQGDRRAGPSLSAFNYDSN
YGKKALTIMYRGIMEQDSFPVVPPGCSDNQSSIQEFIAEAKAALVSVGIIRDAVVCNGKVAGKL
SGRIVDSDMHDVARFLNRLLGLAPKIQNRLFDLFTSILDVVLHNARIEGQLDSGIVDIKAKNVE
MKESPKTVHIDSLSGASTVLFTFTIDRGVTWETAKSMLDERQKDGAGSSNDGFYESKREWMGGR
HFILAFEGSIEGMYKIIRPAIGEALREMPLTELKSKYRKVSSIEKVNKGWQDEYDASSKQLSQI
MDRQSLMRSFTCVKSVTQRRRRLCCFIVLVVLDMFTLVV*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA