Detail information of Os04g0609700_circ_g.1


General Information
CircRNA Name Os04g0609700_circ_g.1
ID in PlantcircBase osa_circ_025156
Alias Os_ciR9552
Organism Oryza sativa
Position chr4: 30888479-30899907  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method find_circ
Parent gene Os04g0609700
Parent gene annotation Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os04
t0609700-01);Similar to H0702G05.10 protein. (Os04t0609700-02)
Parent gene strand -
Alternative splicing Os04g0609700_circ_g.2 Os04g0609700_circ_g.3 Os04g0609700_circ_g.4 Os04g0609700_circ_g.5 Os04g0609700_circ_g.6 Os04g0609700_circ_g.7 Os04g0609700_circ_g.8 Os04g0609700_circ_g.9 Os04g0609700_circ_igg.1 Os04g0609700_circ_g.2
Support reads 2
Tissues root
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0609700-02:2
Os04t0609700-01:18
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTACTAAATAATAAGCCATAAGAGTCACCTCCTCTGTGTTACAGATTTGACACATGTGAAACT
CCTCATCAGACTCTGTCGATCCATGATCTGACTCAGctctgagctgctgcatctaacatcagaa
agcgatcgacaccaccaatatgaatgtgaacaaaacaaatcaagcctatccatgtcagtcatca
atatcttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.095630948
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015