Detail information of Os04g0609700_circ_igg.1


General Information
CircRNA Name Os04g0609700_circ_igg.1
ID in PlantcircBase osa_circ_025165
Alias Os_ciR9554
Organism Oryza sativa
Position chr4: 30902154-30904542  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os04g0609700_circ_g.1 Os04g0609700_circ_g.2 Os04g0609700_circ_g.3 Os04g0609700_circ_g.4 Os04g0609700_circ_g.5 Os04g0609700_circ_g.6 Os04g0609700_circ_g.7 Os04g0609700_circ_g.8 Os04g0609700_circ_g.9 Os04g0609700_circ_g.2
Support reads 2
Tissues root
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATCGCCCCAAAGTCCAAGCCGAACCATATAGCCCAAATTCCGTGGTTCTGATGCACCAGTTGC
CGAGCAATAAACAACCCGTGCCTCAGGTAGCTTTTCatggagagtaatcatcactgtcatcatc
actcacttctaccagttttgctacttttctaacacgtcctttaaatgatacatctggggcagaa
tgccgctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATGGAGAGTAATCATCACTGTCATCATCACTCACTTCTACCAGTTTTGCTACTTTTCTAACACG
TCCTTTAAATGATACATCTGGGGCAGAATGCCGCTTACGGTGAATTTCTGTGACTTTTTCTTCA
CCTAAAAAAATATACACAAAAATAATAATCAATAGTAGAAGACCAGGCAACTAGAGCCGTATGA
GTTATAAACAAACAAGATGAGATAATGTAAGTGAATATGCAAAATAGCATTTTCTATAGGATAC
TAAGCCCAATTTCATAAGTGAAAAATGGCCAAATTCCAATAAATTTGCTTTTGTTTATGCAAGC
AGAAAGGGCTGACAAAATATGAGATGTACAGTTTATTAGGAAAAGAGAAAGACCATTTGACTTT
ATACTACCTTCTAGGTAGTAGCATTTCACTTAGTAGACATGGAAATTGCATTAAAGATATGGTA
AAACTTGAGATTAGTATGATGAAACAGTCAGCACGGACCTTGTTGAAAAGAATCAGGCTTCGGA
GGTAGAGGGTAATTTTCTTCTACCAGCTTTAGAAGCAGCTCCCGAGGACCAGAAACAAAGTCTT
CCATTTCAACACCCTGGTTCATATTGGAAGCAATCAATAATTCGGAGTATTAGGTCAGTTAGGA
AGGCGCTACAATATGATGAAGAGACAAATAAAATGTTCCTTTGGAAATATAAGCTCACATATTT
TGTGATAGCTTCTTCTGTTCGAGCCTCTCCAGTGCTCTGAAGACCAACCACCACACACTTATTC
TCTGCCAGGGCCTCCTTAGCCAACTTCACAACAGCAGGTACTTTTGCAGACATGCACATATGCC
TGAAGAAACGCTGTATAACATAGAAAATCAATTTTGCAAGAATAATTAACCACCCTACTCTTTA
TTTCATATTAGAAGTTTACTTGTCAACTTTTGAATATGCTAAATCAGGGGTAATATTTATGCTA
GAAATGCATTCATGGAACTGAGAAGGATGCAAATATTGCAAAGTAAAAACAAAAGGTTTGATAG
AAATTTATTTCAGAATATGTAAGGAGGTAACACCTGATGGCTAGCCCAATATAGCCGCCATATT
TGATTTGAAATGCCTTCTGTAAATGATTCACCTGCTGATAGGAGCTCAAGGCGGAACTCAGCCC
AAAATTCGGCTGCCTTTCTGTACATATTCTGCATTACCAATAAGATGGAAACTTTACCATGAGC
TATACGATAGGAAAAACCAACTAGCTTAAGTTTAATATTAATATTGTAACAATGATCAATGCAT
AGGAATAATTCAAAGAATGTTTTTTCTTGATAAGCAATCAGAGTATGAAAGAGAACACTGATAC
AGAGAAGACACAAAAGAGCAAAGCAATAATGCATCTTGAAATAAAGTAAAGTAGCAGAAAGTCA
CTTTTTACCATCATTCTTTCCTCAAGGGGAGCCTCCACAATATCAAAATCAACCCCCTTATAAC
TTAGTGTGCGGCAAACATACATACCCCTGCAACAAATTTTATAGAGATGGTACTCAATAAATCA
TTCTGGGGAAAAACACAAGCAAGAGACAATACTTGAACCAAAAAAGGTTTCGAAGGCTACTAGC
CAGTTTTCCATATACAGAAAAAACATTGGACAAAACATATTAGTGGCAACAGTTACCCATTGCA
GATGGACGCTTTCATGCCCATGGAACTAAAGATCTTGGAAAAAAAAATGCTAACCTGGCTTTCA
TGTCCATGGCAACAAGTTCAAGAGCGCCCACACCACCTTTCTCGAGAGATCCTATGTTTTTTTT
CCATAAAATGTGAGTAATGATAGCATTTAGTATGACGTCACATGCAATGCTTCAGTTACCAACT
ACACAACACCCAAGAAAAATCAAAACTGGAGTATACAACCCCGAAAACCATAACTACTAATTGC
CCTAAACAAGTGTTGGAAGCCCAGCAATGGAGACGGGGCACACTCAATACATGTAAATTTATAA
TGCAGTTTGAATTACTTGGGGAAGCAGAAACCAAATACAGTGCTTCACAACTCTACTAGTATGA
CTCAACCATAAGTTTCTGGTGATCCCCCACAAAATAGTCTAGTACAGCCACAATTTATAGCCCA
TTACTAGGGTTCAGTATTGACCAGCATGCTTGATGCCAACATGAAAAGCCAAGCTGTTCTTTTG
TATCGAAGTTAAAATAAATGCAAATAATAAATAATAAAAGAAAAGAAGGATTCAAGTACAAATA
GGTTAAAGAAGTAGACCTAAAAATTGCGCAAAATTCTGAAATGATGTTCCATCGCCCCAAAGTC
CAAGCCGAACCATATAGCCCAAATTCCGTGGTTCTGATGCACCAGTTGCCGAGCAATAAACAAC
CCGTGCCTCAGGTAGCTTTTC
Conservation Information
Conserved circRNAs osi_circ_005714* osi_circ_014766
PMCS 0.219763496
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015