Detailed infomation of each circRNA
General Information | |
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CircRNA Name | BGIOSGA014376_circ_g.4 |
ID in PlantcircBase | osi_circ_005712 |
Alias | 4:29768071|29772882 |
Organism | Oryza sativa ssp. indica |
Position | chr4: 29768071-29772882 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA014376 |
Parent gene annotation | NA |
Parent gene strand | - |
Alternative splicing | BGIOSGA014376_circ_g.1 BGIOSGA014376_circ_g.2 BGIOSGA014376_circ_g.3 BGIOSGA014376_circ_g.5 BGIOSGA014376_circ_g.6 BGIOSGA014376_circ_g.7 BGIOSGA014376_circ_g.8 BGIOSGA014376_circ_g.9 BGIOSGA014376_circ_g.10 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | BGIOSGA014376-TA:15 |
Conservation Information | |
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Conserved circRNAs | osa_circ_025160* |
PMCS |
Functional Information | |
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Coding potential | Y |
Potential coding position |
29772840-29772306(-) 29772257-29768124(+) |
Potential amino acid sequence |
MCQICNTEEEKTLLLHCSGCSRHVHPGCLTPPWTGVLTDDWSCYTCKKLEGEENEQDAHVADFS QRYDAAVEKKKKILDMIRSLDLPNNPLDDIIDQLGGPDNVAEITGRRGMLIRASDGKGVVYQAR NAKEVSMEMINMHEKQQFMDGKKLISIISEAGSAGVSLHADRRAKNQRRRVHITLELPWSADRA IQQFGRTHRSNQTSAPQYRLLFTNLGGEKRFASIVAKRLESLGALTQGDRRAGPSLSAFNYDSN YGKKALTIMYRGIMEQDSFPVVPPGCSDNQSSIQEFIAEAKAALVSVGIIRDAVVCNGKVAGKL SGRIVDSDMHDVARFLNRLLGLAPKIQNRLFDLFTSILDVVLHNARIEGQLDSGIVDIKAKNVE MKESPKTVHIDSLSGASTVLFTFTIDRGVTWETAKSMLDERQKDGAGSSNDGFYESKREWMGGR HFILAFEGSIEGMYKIIRPAIGEALREMPLTELKSKYRKVSSIEKVNKGWQDEYDASSKQLSQI MDRQSLMRSFTCVKSVTQRRRRLCCFIVLVVLDMFTLVV*(-) MCSMTSHQLIPQSKVVSDNQGEHVENNQNNEATESSPPLCYRFDTCETPHQTLSIHDLTQLLGR SIIFILPTFVNLFY*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Huang et al., 2021 |