Detail information of BGIOSGA014376_circ_g.4


General Information
CircRNA Name BGIOSGA014376_circ_g.4
ID in PlantcircBase osi_circ_005712
Alias 4:29768071|29772882
Organism Oryza sativa ssp. indica
Position chr4: 29768071-29772882  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA014376
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014376_circ_g.1 BGIOSGA014376_circ_g.2 BGIOSGA014376_circ_g.3 BGIOSGA014376_circ_g.5 BGIOSGA014376_circ_g.6 BGIOSGA014376_circ_g.7 BGIOSGA014376_circ_g.8 BGIOSGA014376_circ_g.9 BGIOSGA014376_circ_g.10
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA014376-TA:15
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTACTAAATAATAAGCCATAAGAGTCACCTCCTCTGTGTTACAGATTTGACACATGTGAAACT
CCTCATCAGACTCTGTCGATCCATGATCTGACTCAGctgcttggacgaagcatcatattcatct
tgccaacctttgttaaccttttctattgatgacactttcctgtacttgcttttcagttctgtta
aaggcatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGCTTGGACGAAGCATCATATTCATCTTGCCAACCTTTGTTAACCTTTTCTATTGATGACACT
TTCCTGTACTTGCTTTTCAGTTCTGTTAAAGGCATTTCTCTGCAATAGAAACATGGAGTGTAAC
CAAAAAAAAAATTAAATAGCATTTTTTATATAAACATATCGTACCTGCTAGGCTACTAGACATG
GTGATTAAACATGAAGCTGTATGCAGTATAAATTTTTCTTACAATAGGTTACACCAGAAAAAAT
ATATAATAATGAACTGCAGATACCTTAATGCTTCACCAATAGCAGGTCGAATTATTTTATACAT
CCCTTCGATTGAGCTGGTTCACAAACAAAATGGAACAAAGAGTCAGGTCATAGCATCACATTTC
AAATCAACTATTTTTGTTGACAAAAGGAAAAACTAGTACTAGCACATTGTATAGTTTCCACTGC
TTTATAGAAATACGAAAATGCTCCTCAGTTGCTAGCAAATAAAGATTTTTTTTCATTTATCTAA
TAAGCGTAGTTTGCAGTTCTCAACTAAATAATGAGGTGCCTTTTCATTTTATTTATTTATTTTG
CTAATCACATTTGGCCAGAATTCATTCAGCGTTAGATTGATTAATATTCCAATTCAGTCTTTTT
CCTCGATACACACGGTATCAATTGCATGGTAAATTTCTACTACATTATTTATCTATTCCTCTAT
TTGAATAAGGGTTTTCAGTTTTTAGCAATGCTAAGTTGCTAACAGATGGCTGATAAGAACTAAA
GAATAAATAAATGATTATCCAACATACCCTTCAAAAGCAAGTATGAAATGCCTTCCTCCCATCC
ATTCCCTTTTGGACTCGTAAAACCCATCATTAGAAGAACCAGCACCATCCTTTTGCCTCTCATC
AAGCATTGATTTTGCCGTCTTTACACGTTCACAAAAGCAATTGAGCAAAAACCATAGAAGTTGC
AGTTTTACAAGAAACATGGACTGTACTTTTAAATACAGCTACAACCATGTCTCTCAAGGAAAAA
CAGAATTCGACTACCAAAGTTGTATGTTTACCTCCCAAGTAACTCCTCGGTCAATGGTGAAAGT
AAAAAGTACAGTTGACGCGCCTGACAAGCTATCAATGTGAACGGTCTGCAAGGAGAAAATGCAT
TAAGAATCTACAGATTAGAAGCACAGAGCAGACAAAGCAAAAAGTTTTCTAAAAGAGCATTGCC
TTGGGTGATTCTTTCATTTCAACATTTTTAGCTTTTATATCAACGATTCCAGAATCCAGCTGCC
CTTCTATTCGTGCATTGTGCAAAACAACATCAAGTATACTTGTAAAAAGATCAAATAACCTGTT
ACATAGAGAATGTGTAAGTATAGTCCAACCATCTCAAGTTACAGGATACTGCATGGCATCTCAC
CTATTCTGGATTTTCGGAGCCAGTCCCAAAAGGCGGTTAAGAAAACGAGCAACATCATGCATAT
CTGAGTCAACAATCCGACCAGAAAGCTTCCCAGCAACTTTTCCATTGCCTGAGGAAAAACGTTA
AATGAGTCCAACACAGTCACAAACACTAAGGTATGGAAGAAAGAAAGTGTCTAATTGTTTCTGG
GTAAACTTACACACTACAGCATCCCTGATAATCCCAACTGATACTAGAGCAGCTTTTGCTTCAG
CAATGAACTCTTGGATGCTAGATTGATTGTCAGAACACCCCGGAGGAACAACTGGAAAAGAATC
CTGGTCATCTTGAAAGTAACTCTTAGAATGGTGAATAAAGCATGAAAAGGAAAACATATTCAAA
AACTATAGTGTAATTATATAAACCTGCTCCATTATTCCTCTATACATGATGGTTAGGGCTTTTT
TCCCATAATTGCTGTCGTAGTTAAAAGCACTCAGAGAAGGTCCAGCCCTGCAGAAGTAGAAGTC
AGTTAAGATATGATTTAGCTGATGTCGATACAAAATTGGTTGAAATCAGCAAAAACCTGCGATC
TCCTTGCGTTAAAGCTCCTAGAGACTCCAGTCTTTTTGCTACGATTGATGCAAATCGCTTTTCA
CCACCAAGATTTGTAAAGAGAAGCCTGCAATTGAGATTCCAAATTTATTTTTAAGATATACATC
TATATAGCAAATGTACATCCATGCCATGTGAACATGTGAAATTAATAGTAAAATAGCGAGTCTG
GATAACCAATATAAAGTAGAATGACTATTATTTTTCCATCCACATCAAATAACCACTTTGCCTC
ATTGTCTCAGCATTTAAGTATTACATGAATATATTGCGTACACAGCACTGGTCCCCAATTCCCA
CCTTCATGCTAGATATTTTTAAAGACTACATAAATAAATTCATGAGACTTCAAATTTCTTTCGT
CAGACAGACACGTCACTAATTGTTACAGGTTCCAGCAGACAGCCATCACATATTATAGCTACAT
ACAATACACTGAAACCAGCAATTTTATCTATATATGTTTGATTTGTGCTTACTTCACTGCTTGA
CAAATTTCAGTCTGCCCTAGCTCTTCATTCATGACTCGTATACAGTACCAGAAGACAATATAAC
GGAAATCCCTATTCTAGCAATTTGTTTTGCTGAATGGCAATACGGACAATCGAAACACAGACCT
ACAAGAAGCTAGAGATGGCTCATATGAGAAATATAAAGCATACCTATATTGTGGTGCAGAAGTT
TGATTAGAACGATGAGTTCTCCCAAACTGTTGTATTGCACGATCTGCACTCCAAGGGAGCTCAA
GTGTTATGTGTACTCTTCTTCTCTGCAAAGTTCATTAAGAAGTTTCATCAAAATTACAACAGAC
CAACCTCTGGTGTATTTGAAACATGTGGATAAAATGAAGAATCATAAAACCTGGTTTTTTGCCC
TTCTATCAGCATGCAGCGAAACGCCAGCTGATCCTGCTTCAGATATAATAGATATTAGTTTTTT
GCCATCCATGAACTGCTGTTTTTCATGCATATTGATCATCTCCATCGACACTTCTTTCCTACAT
ACAGAAAATGCACACGTATGGGATTAGTTGAACCAGAGAAACATAATGCAAAATCACAAGTAAG
CTATCTCACGCATTCCGCGCCTGATAAACAACGCCTTTTCCGTCAGAAGCTCTTATTAGCATAC
CACGCCGTCCAGTTATTTCTGCAACATTGTCAGGGCCTCCTAGCTGCAAAATCCAAATAAAATG
GAAAAATATTAATTATATGTATGGTCCAATAATACTAGAACGAGTTAAAATTAAGATAGGGAAA
AAGATTGTAAAATAATTCAACACAAATTAAACACTGATAAACATATGTCAGGACAATGATTACA
AGCTCATTGCATAATCTTCAGCCAAAATGGGTCTGAAAATGGGAGAACTAACTAATAAACAGGG
ATTGAATATCTATGCAGGAACAATTTAGTTGAGATATGACAGTGGTGCTTAATTCACAAGAGCT
TACTCAAGAAATAAACATATAATTTGACATATCTGACCACCCTTTCTCCTGCTCCAAAATGCAA
CATCATTAACCTACACCTTATTGTGATAATCATCTAACAGACATCCAGAAGATAAGAAAATGGA
AGAGATGTCATGTATATATGAGTTAATGGGTAACAACTCCTAGCTAGCTGCATGAGAATCTTTG
TAATATCTTGATGTCCAAATTTCTTCTACAGCCCAGCCCTGCTGAGCAGGCCTATGCAAGTCTA
GCAGTTCACTTGGATTTGCATCCCAACTTCAGCAAAAAGGATTAGCCCAAAATTGTAATGGTTG
GTCCTCAAACATAATATGCTAGTACTACAGTACTACCACTACTCTGAACTTTGAAATCTGCCCC
TTTCACATCAGTTAACTGTGCAAACAGATGTCAATGCAAGCTCAAAGTTAAAAAATAACCACAG
ATTCAATTATCAACATTTCCAGGTGATGTAAGCCAATATTACCTGATCAATGATGTCATCAAGA
GGATTGTTAGGGAGATCCAAAGAACGTATCATATCCAAAATCTTCTTTTTTTTCTCTACTGCAG
CATCATACCTGACAGCAAGGCACAGGACAAGTATTTATATAATTGGGTGTGGGCATTTTATGGG
GATCTTGATTTGTCAAACGCACACGTACCTCTGTGAAAAATCAGCTACATGAGCATCTTGTTCA
TTTTCCTCTCCTTCTAACTTCTTGCATGTGTAGCATGACCAGTCATCAGTTAATACCCCAGTCC
AAGGTGGTGTCAGACAACCAGGGTGAACATGTCGAGAACAACCAGAACAATGAAGCAACAGAGT
CTTCTCCTGAAAATTAAGATATTGTTGTGTAAAAACTATAAATGACAGTGCACTTCCAAAGAGA
TTTAACATTAACGGACAATATATTTTCCTGTAAGCATTCTACAAATAATAATCAATTGTGGTAT
GGTTACCAGCTTGAACTATAGGAAATCGTAATCAAATACTAAATAGTTTCAGCAAATACAAAAG
AAAGAATTGCACATACAGAAAATGTAACCAGCTAGCAAAAAGAACTGAGGTCAAAGAACATGGC
ACAGACCGAATGTAACATTATTGTATATACTACCTCCGTCCCAAAATATAGCAACTTCTAGCTA
TGTATCTGGACAAACATTTATCTAGATACATAGCCAAAAGTTTCTAAATTTTGGGATGGAGAGA
GTAATAATTTTTGGTATTACGGATCTGTATATGACATTATTGTACTAAATAATAAGCCATAAGA
GTCACCTCCTCTGTGTTACAGATTTGACACATGTGAAACTCCTCATCAGACTCTGTCGATCCAT
GATCTGACTCAG
Conservation Information
Conserved circRNAs osa_circ_025160*
PMCS
Functional Information
Coding potential Y
Potential coding position 29772840-29772306(-)
29772257-29768124(+)
Potential amino acid sequence MCQICNTEEEKTLLLHCSGCSRHVHPGCLTPPWTGVLTDDWSCYTCKKLEGEENEQDAHVADFS
QRYDAAVEKKKKILDMIRSLDLPNNPLDDIIDQLGGPDNVAEITGRRGMLIRASDGKGVVYQAR
NAKEVSMEMINMHEKQQFMDGKKLISIISEAGSAGVSLHADRRAKNQRRRVHITLELPWSADRA
IQQFGRTHRSNQTSAPQYRLLFTNLGGEKRFASIVAKRLESLGALTQGDRRAGPSLSAFNYDSN
YGKKALTIMYRGIMEQDSFPVVPPGCSDNQSSIQEFIAEAKAALVSVGIIRDAVVCNGKVAGKL
SGRIVDSDMHDVARFLNRLLGLAPKIQNRLFDLFTSILDVVLHNARIEGQLDSGIVDIKAKNVE
MKESPKTVHIDSLSGASTVLFTFTIDRGVTWETAKSMLDERQKDGAGSSNDGFYESKREWMGGR
HFILAFEGSIEGMYKIIRPAIGEALREMPLTELKSKYRKVSSIEKVNKGWQDEYDASSKQLSQI
MDRQSLMRSFTCVKSVTQRRRRLCCFIVLVVLDMFTLVV*(-)
MCSMTSHQLIPQSKVVSDNQGEHVENNQNNEATESSPPLCYRFDTCETPHQTLSIHDLTQLLGR
SIIFILPTFVNLFY*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021