Detail information of BGIOSGA014376_circ_g.3


General Information
CircRNA Name BGIOSGA014376_circ_g.3
ID in PlantcircBase osi_circ_014763
Alias Chr04:31557970_31562782(MH63RS2), Chr04:31557970_31562782(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 29768070-29772882  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA014376
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014376_circ_g.1 BGIOSGA014376_circ_g.2 BGIOSGA014376_circ_g.4 BGIOSGA014376_circ_g.5 BGIOSGA014376_circ_g.6 BGIOSGA014376_circ_g.7 BGIOSGA014376_circ_g.8 BGIOSGA014376_circ_g.9 BGIOSGA014376_circ_g.10
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA014376-TA:15
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTACTAAATAATAAGCCATAAGAGTCACCTCCTCTGTGTTACAGATTTGACACATGTGAAACT
CCTCATCAGACTCTGTCGATCCATGATCTGACTCAGcctgcttggacgaagcatcatattcatc
ttgccaacctttgttaaccttttctattgatgacactttcctgtacttgcttttcagttctgtt
aaaggcat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGCTTGGACGAAGCATCATATTCATCTTGCCAACCTTTGTTAACCTTTTCTATTGATGACAC
TTTCCTGTACTTGCTTTTCAGTTCTGTTAAAGGCATTTCTCTGCAATAGAAACATGGAGTGTAA
CCAAAAAAAAAATTAAATAGCATTTTTTATATAAACATATCGTACCTGCTAGGCTACTAGACAT
GGTGATTAAACATGAAGCTGTATGCAGTATAAATTTTTCTTACAATAGGTTACACCAGAAAAAA
TATATAATAATGAACTGCAGATACCTTAATGCTTCACCAATAGCAGGTCGAATTATTTTATACA
TCCCTTCGATTGAGCTGGTTCACAAACAAAATGGAACAAAGAGTCAGGTCATAGCATCACATTT
CAAATCAACTATTTTTGTTGACAAAAGGAAAAACTAGTACTAGCACATTGTATAGTTTCCACTG
CTTTATAGAAATACGAAAATGCTCCTCAGTTGCTAGCAAATAAAGATTTTTTTTCATTTATCTA
ATAAGCGTAGTTTGCAGTTCTCAACTAAATAATGAGGTGCCTTTTCATTTTATTTATTTATTTT
GCTAATCACATTTGGCCAGAATTCATTCAGCGTTAGATTGATTAATATTCCAATTCAGTCTTTT
TCCTCGATACACACGGTATCAATTGCATGGTAAATTTCTACTACATTATTTATCTATTCCTCTA
TTTGAATAAGGGTTTTCAGTTTTTAGCAATGCTAAGTTGCTAACAGATGGCTGATAAGAACTAA
AGAATAAATAAATGATTATCCAACATACCCTTCAAAAGCAAGTATGAAATGCCTTCCTCCCATC
CATTCCCTTTTGGACTCGTAAAACCCATCATTAGAAGAACCAGCACCATCCTTTTGCCTCTCAT
CAAGCATTGATTTTGCCGTCTTTACACGTTCACAAAAGCAATTGAGCAAAAACCATAGAAGTTG
CAGTTTTACAAGAAACATGGACTGTACTTTTAAATACAGCTACAACCATGTCTCTCAAGGAAAA
ACAGAATTCGACTACCAAAGTTGTATGTTTACCTCCCAAGTAACTCCTCGGTCAATGGTGAAAG
TAAAAAGTACAGTTGACGCGCCTGACAAGCTATCAATGTGAACGGTCTGCAAGGAGAAAATGCA
TTAAGAATCTACAGATTAGAAGCACAGAGCAGACAAAGCAAAAAGTTTTCTAAAAGAGCATTGC
CTTGGGTGATTCTTTCATTTCAACATTTTTAGCTTTTATATCAACGATTCCAGAATCCAGCTGC
CCTTCTATTCGTGCATTGTGCAAAACAACATCAAGTATACTTGTAAAAAGATCAAATAACCTGT
TACATAGAGAATGTGTAAGTATAGTCCAACCATCTCAAGTTACAGGATACTGCATGGCATCTCA
CCTATTCTGGATTTTCGGAGCCAGTCCCAAAAGGCGGTTAAGAAAACGAGCAACATCATGCATA
TCTGAGTCAACAATCCGACCAGAAAGCTTCCCAGCAACTTTTCCATTGCCTGAGGAAAAACGTT
AAATGAGTCCAACACAGTCACAAACACTAAGGTATGGAAGAAAGAAAGTGTCTAATTGTTTCTG
GGTAAACTTACACACTACAGCATCCCTGATAATCCCAACTGATACTAGAGCAGCTTTTGCTTCA
GCAATGAACTCTTGGATGCTAGATTGATTGTCAGAACACCCCGGAGGAACAACTGGAAAAGAAT
CCTGGTCATCTTGAAAGTAACTCTTAGAATGGTGAATAAAGCATGAAAAGGAAAACATATTCAA
AAACTATAGTGTAATTATATAAACCTGCTCCATTATTCCTCTATACATGATGGTTAGGGCTTTT
TTCCCATAATTGCTGTCGTAGTTAAAAGCACTCAGAGAAGGTCCAGCCCTGCAGAAGTAGAAGT
CAGTTAAGATATGATTTAGCTGATGTCGATACAAAATTGGTTGAAATCAGCAAAAACCTGCGAT
CTCCTTGCGTTAAAGCTCCTAGAGACTCCAGTCTTTTTGCTACGATTGATGCAAATCGCTTTTC
ACCACCAAGATTTGTAAAGAGAAGCCTGCAATTGAGATTCCAAATTTATTTTTAAGATATACAT
CTATATAGCAAATGTACATCCATGCCATGTGAACATGTGAAATTAATAGTAAAATAGCGAGTCT
GGATAACCAATATAAAGTAGAATGACTATTATTTTTCCATCCACATCAAATAACCACTTTGCCT
CATTGTCTCAGCATTTAAGTATTACATGAATATATTGCGTACACAGCACTGGTCCCCAATTCCC
ACCTTCATGCTAGATATTTTTAAAGACTACATAAATAAATTCATGAGACTTCAAATTTCTTTCG
TCAGACAGACACGTCACTAATTGTTACAGGTTCCAGCAGACAGCCATCACATATTATAGCTACA
TACAATACACTGAAACCAGCAATTTTATCTATATATGTTTGATTTGTGCTTACTTCACTGCTTG
ACAAATTTCAGTCTGCCCTAGCTCTTCATTCATGACTCGTATACAGTACCAGAAGACAATATAA
CGGAAATCCCTATTCTAGCAATTTGTTTTGCTGAATGGCAATACGGACAATCGAAACACAGACC
TACAAGAAGCTAGAGATGGCTCATATGAGAAATATAAAGCATACCTATATTGTGGTGCAGAAGT
TTGATTAGAACGATGAGTTCTCCCAAACTGTTGTATTGCACGATCTGCACTCCAAGGGAGCTCA
AGTGTTATGTGTACTCTTCTTCTCTGCAAAGTTCATTAAGAAGTTTCATCAAAATTACAACAGA
CCAACCTCTGGTGTATTTGAAACATGTGGATAAAATGAAGAATCATAAAACCTGGTTTTTTGCC
CTTCTATCAGCATGCAGCGAAACGCCAGCTGATCCTGCTTCAGATATAATAGATATTAGTTTTT
TGCCATCCATGAACTGCTGTTTTTCATGCATATTGATCATCTCCATCGACACTTCTTTCCTACA
TACAGAAAATGCACACGTATGGGATTAGTTGAACCAGAGAAACATAATGCAAAATCACAAGTAA
GCTATCTCACGCATTCCGCGCCTGATAAACAACGCCTTTTCCGTCAGAAGCTCTTATTAGCATA
CCACGCCGTCCAGTTATTTCTGCAACATTGTCAGGGCCTCCTAGCTGCAAAATCCAAATAAAAT
GGAAAAATATTAATTATATGTATGGTCCAATAATACTAGAACGAGTTAAAATTAAGATAGGGAA
AAAGATTGTAAAATAATTCAACACAAATTAAACACTGATAAACATATGTCAGGACAATGATTAC
AAGCTCATTGCATAATCTTCAGCCAAAATGGGTCTGAAAATGGGAGAACTAACTAATAAACAGG
GATTGAATATCTATGCAGGAACAATTTAGTTGAGATATGACAGTGGTGCTTAATTCACAAGAGC
TTACTCAAGAAATAAACATATAATTTGACATATCTGACCACCCTTTCTCCTGCTCCAAAATGCA
ACATCATTAACCTACACCTTATTGTGATAATCATCTAACAGACATCCAGAAGATAAGAAAATGG
AAGAGATGTCATGTATATATGAGTTAATGGGTAACAACTCCTAGCTAGCTGCATGAGAATCTTT
GTAATATCTTGATGTCCAAATTTCTTCTACAGCCCAGCCCTGCTGAGCAGGCCTATGCAAGTCT
AGCAGTTCACTTGGATTTGCATCCCAACTTCAGCAAAAAGGATTAGCCCAAAATTGTAATGGTT
GGTCCTCAAACATAATATGCTAGTACTACAGTACTACCACTACTCTGAACTTTGAAATCTGCCC
CTTTCACATCAGTTAACTGTGCAAACAGATGTCAATGCAAGCTCAAAGTTAAAAAATAACCACA
GATTCAATTATCAACATTTCCAGGTGATGTAAGCCAATATTACCTGATCAATGATGTCATCAAG
AGGATTGTTAGGGAGATCCAAAGAACGTATCATATCCAAAATCTTCTTTTTTTTCTCTACTGCA
GCATCATACCTGACAGCAAGGCACAGGACAAGTATTTATATAATTGGGTGTGGGCATTTTATGG
GGATCTTGATTTGTCAAACGCACACGTACCTCTGTGAAAAATCAGCTACATGAGCATCTTGTTC
ATTTTCCTCTCCTTCTAACTTCTTGCATGTGTAGCATGACCAGTCATCAGTTAATACCCCAGTC
CAAGGTGGTGTCAGACAACCAGGGTGAACATGTCGAGAACAACCAGAACAATGAAGCAACAGAG
TCTTCTCCTGAAAATTAAGATATTGTTGTGTAAAAACTATAAATGACAGTGCACTTCCAAAGAG
ATTTAACATTAACGGACAATATATTTTCCTGTAAGCATTCTACAAATAATAATCAATTGTGGTA
TGGTTACCAGCTTGAACTATAGGAAATCGTAATCAAATACTAAATAGTTTCAGCAAATACAAAA
GAAAGAATTGCACATACAGAAAATGTAACCAGCTAGCAAAAAGAACTGAGGTCAAAGAACATGG
CACAGACCGAATGTAACATTATTGTATATACTACCTCCGTCCCAAAATATAGCAACTTCTAGCT
ATGTATCTGGACAAACATTTATCTAGATACATAGCCAAAAGTTTCTAAATTTTGGGATGGAGAG
AGTAATAATTTTTGGTATTACGGATCTGTATATGACATTATTGTACTAAATAATAAGCCATAAG
AGTCACCTCCTCTGTGTTACAGATTTGACACATGTGAAACTCCTCATCAGACTCTGTCGATCCA
TGATCTGACTCAG
Conservation Information
Conserved circRNAs osa_circ_025160
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021