Detail information of Os04g0609700_circ_g.2


General Information
CircRNA Name Os04g0609700_circ_g.2
ID in PlantcircBase osa_circ_025157
Alias Os_ciR9553
Organism Oryza sativa
Position chr4: 30889012-30889961  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os04g0609700
Parent gene annotation Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os04
t0609700-01);Similar to H0702G05.10 protein. (Os04t0609700-02)
Parent gene strand -
Alternative splicing Os04g0609700_circ_g.1 Os04g0609700_circ_g.3 Os04g0609700_circ_g.4 Os04g0609700_circ_g.5 Os04g0609700_circ_g.6 Os04g0609700_circ_g.7 Os04g0609700_circ_g.8 Os04g0609700_circ_g.9 Os04g0609700_circ_igg.1 Os04g0609700_circ_g.2
Support reads 2/1
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0609700-02:1
Os04t0609700-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCCAAACTGGAAGTATGAGACCACCCAAGATGTTAACCTCTTGCAACCTTCTTCCCACTGTACA
GTAGCTTCCCACTTTGCATTTCGATCCATGCATACActgttaatactgactccacagctgaatt
cggaatgagtagtccaacgattcgctgattgtcagttgttgtctctaaacggacaacacgtact
cgcttgtg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 241
Transcript exons: 30889012-30889123,30889833-30889961
CTGTTAATACTGACTCCACAGCTGAATTCGGAATGAGTAGTCCAACGATTCGCTGATTGTCAGT
TGTTGTCTCTAAACGGACAACACGTACTCGCTTGTGACTTTGACGAACCTGCTTAGCTAGGGCC
TTTTCTATTGTACCCCAAACTGGAAGTATGAGACCACCCAAGATGTTAACCTCTTGCAACCTTC
TTCCCACTGTACAGTAGCTTCCCACTTTGCATTTCGATCCATGCATACA

Genomic sequence CTGTTAATACTGACTCCACAGCTGAATTCGGAATGAGTAGTCCAACGATTCGCTGATTGTCAGT
TGTTGTCTCTAAACGGACAACACGTACTCGCTTGTGACTTTGACGAACCTGCTCAATAACAGCA
GCAAGGCACAGAGGCGTTAAACATCAAACAATCATGCACCAATTCAGCTAAAGCATAAAAATCC
AGAGAGTAAATCATTCTGTAACTTTGTTTTATTGTGAGATACTGGACTTCTACTTTTAGCTTTA
GACAAAATCATCTAGCTCTTGCTTGATGGGTAGAAAGGTCAGAGCCTCAGAGGATTCTTTTAGG
GAAATATGTCCAGATCATCATTATTACTATGGTGTATGTTCTGTGTTGATGAAGGAATCATTCC
CTATTAAGTATTGGAGATTCAAGTTAACACCAAACTTTATCCCCTTATTTTCGAATCCACCAAA
TCTCTTTCTAACTTTAGTTAATGCCCTGAGAAGCTCTGTGCTACTGCCCCTGCCATCCAGCTAC
ACTCAAGACCATTTTACTGCCTGTCCTTTAACTTCTTAGCTTTGTTCATCAAATAGATTTTTTT
AAGGTACTTTCAAGGGGATCCCTTTACCTTACCCTAAAGACTAAAGAGTAGAGACTCCAGAGCT
TTGAGAAGTTTGTGTCTACATGGAAAAAGCGGATGACACAAGAGCCAATACAAGAGACGCAATG
CCAAGATCGGAAGATCTAAAATCATATCAACCCATTGAATATATCGGAACCCACCATTCAATTA
AGATGAAAAAGTAGCAACCGTAAGACTTTAGAATAAGTGGCATAGGAGTGAACCTGCTTAGCTA
GGGCCTTTTCTATTGTACCCCAAACTGGAAGTATGAGACCACCCAAGATGTTAACCTCTTGCAA
CCTTCTTCCCACTGTACAGTAGCTTCCCACTTTGCATTTCGATCCATGCATACA
Conservation Information
Conserved circRNAs NA
PMCS 0.226578614
Functional Information
Coding potential Y
Potential coding position 30889960-30889896(-)
Potential amino acid sequence MHGSKCKVGSYCTVGRRLQEVNILGGLILPVWGTIEKALAKQVRQSHKRVRVVRLETTTDNQRI
VGLLIPNSAVESVLTVYAWIEMQSGKLLYSGKKVARG*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017