Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os04g0609700_circ_g.4 |
ID in PlantcircBase | osa_circ_025159 |
Alias | NA |
Organism | Oryza sativa |
Position | chr4: 30895096-30899389 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os04g0609700 |
Parent gene annotation |
Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os04 t0609700-01);Similar to H0702G05.10 protein. (Os04t0609700-02) |
Parent gene strand | - |
Alternative splicing | Os04g0609700_circ_g.1 Os04g0609700_circ_g.2 Os04g0609700_circ_g.3 Os04g0609700_circ_g.5 Os04g0609700_circ_g.6 Os04g0609700_circ_g.7 Os04g0609700_circ_g.8 Os04g0609700_circ_g.9 Os04g0609700_circ_igg.1 Os04g0609700_circ_g.2 |
Support reads | 1 |
Tissues | shoot |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os04t0609700-01:14 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.219181792 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
30899349-30895149(+) 30899282-30895136(+) 30899097-30895098(-) 30895123-30899331(-) |
Potential amino acid sequence |
MSRTTRTMKQQSLLLLGRSIIFILPTFVNLFY*(+) MCSMTSHQLIPQSKVVSDNQGEHVENNQNNEATESSPAWTKHHIHLANLC*(+) MIRSLDLPNNPLDDIIDQLGGPDNVAEITGRRGMLIRASDGKGVVYQARNAKEVSMEMINMHEK QQFMDGKKLISIISEAGSAGVSLHADRRAKNQRRRVHITLELPWSADRAIQQFGRTHRSNQTSA PQYRLLFTNLGGEKRFASIVAKRLESLGALTQGDRRAGPSLSAFNYDSNYGKKALTIMYRGIME QDSFPVVPPGCSDNQSSIQEFIAEAKAALVSVGIIRDAVVCNGKVAGKLSGRIVDSDMHDVARF LNRLLGLAPKIQNRLFDLFTSILDVVLHNARIEGQLDSGIVDIKAKNVEMKESPKTVHIDSLSG ASTVLFTFTIDRGVTWETAKSMLDERQKDGAGSSNDGFYESKREWMGGRHFILAFEGSIEGMYK IIRPAIGEALREMPLTELKSKYRKVSSIEKVNKGWQDEYDASSKQEKTLLLHCSGCSRHVHPGC LTPPWTGVLTDDWSCYTCKKLEGEENEQDAHVADFSQRYDAAVEKKKKILDMIRSLDLPNNPLD DIIDQLGGPDNVAEITGRRGMLIRASDGKGVVYQARNAKEVSMEMINMHEKQQFMDGKKLISII SEAGSAGVSLHADRRAKNQRRRVHITLELPWSADRAIQQFGRTHRSNQTSAPQYRLLFTNLGGE KRFASIVAKRLESLGALTQGDRRAGPSLSAFNYDSNYGKKALTIMYRGIMEQDSFPVVPPGCSD NQSSIQEFIAEAKAALVSVGIIRDAVVCNGKVAGKLSGRIVDSDMHDVARFLNRLLGLAPKIQN RLFDLFTSILDVVLHNARIEGQLDSGIVDIKAKNVEMKESPKTVHIDSLSGASTVLFTFTIDRG VTWETAKSMLDERQKDGAGSSNDGFYESKREWMGGRHFILAFEGSIEGMYKIIRPAIGEALREM PLTELKSKYRKVSSIEKVNKGWQDEYDASSKQEKTLLLHCSGCSRHVHPGCLTPPWTGVLTDDW SCYTCKKLEGEENEQDAHVADFSQRYDAAVEKKKKILDMIRSLDLPNNPLDDIIDQLGGPDNVA EITGRRGMLIRASDGKGVVYQARNAKEVSMEMINMHEKQQFMDGKKLISIISEAGSAGVSLHAD RRAKNQRRRVHITLELPWSADRAIQQFGRTHRSNQTSAPQYRLLFTNLGGEKRFASIVAKRLES LGALTQGDRRAGPSLSAFNYDSNYGKKALTIMYRGIMEQDSFPVVPPGCSDNQSSIQEFIAEAK AALVSVGIIRDAVVCNGKVAGKLSGRIVDSDMHDVARFLNRLLGLAPKIQNRLFDLFTSILDVV LHNARIEGQLDSGIVDIKAKNVEMKESPKTVHIDSLSGASTVLFTFTIDRGVTWETAKSMLDER QKDGAGSSNDGFYESKREWMGGRHFILAFEGSIEGMYKIIRPAIGEALREMPLTELKSKYRKVS SIEKVNKGWQDEYDASSKQEKTLLLHCSGCSRHVHPGCLTPPWTGVLTDDWSCYTCKKLEGEEN EQDAHVADFSQRYDAAVEKKKKILDMIRSLDLPNNPLDDIIDQLGGPDNVAEITGRRGMLIRAS DGKGVVYQARNAKEVSMEMINMHEKQQFMDGKKLISIISEAGSAGVSLHADRRAKNQRRRVHIT LELPWSADRAIQQFGRTHRSNQTSAPQYRLLFTNLGGEKRFASIVAKRLESLGALTQGDRRAGP SLSAFNYDSNYGKKALTIMYRGIMEQDSFPVVPPGCSDNQSSIQEFIAEAKAALVSVGIIRDAV VCNGKVAGKLSGRIVDSDMHDVARFLNRLLGLAPKIQNRLFDLFTSILDVVLHNARIEGQLDSG IVDIKAKNVEMKESPKTVHIDSLSGASTVLFTFTIDRGVTWETAKSMLDERQKDGAGSSNDGFY ESKREWMGGRHFILAFEGSIEGMYKIIRPAIGEALREMPLTELKSKYRKVSSIEKVNKGWQDEY DASSKQ(-) MNMMLRPSRRRLCCFIVLVVLDMFTLVV*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |