Detail information of Os04g0609700_circ_g.4


General Information
CircRNA Name Os04g0609700_circ_g.4
ID in PlantcircBase osa_circ_025159
Alias NA
Organism Oryza sativa
Position chr4: 30895096-30899389  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0609700
Parent gene annotation Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os04
t0609700-01);Similar to H0702G05.10 protein. (Os04t0609700-02)
Parent gene strand -
Alternative splicing Os04g0609700_circ_g.1 Os04g0609700_circ_g.2 Os04g0609700_circ_g.3 Os04g0609700_circ_g.5 Os04g0609700_circ_g.6 Os04g0609700_circ_g.7 Os04g0609700_circ_g.8 Os04g0609700_circ_g.9 Os04g0609700_circ_igg.1 Os04g0609700_circ_g.2
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0609700-01:14
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGACCAGTCATCAGTTAATACCCCAGTCCAAGGTGGTGTCAGACAACCAGGGTGAACATGTCG
AGAACAACCAGAACAATGAAGCAACAGAGTCTTCTCctgcttggacgaagcatcatattcatct
tgccaacctttgttaaccttttctattgatgacactttcctgtacttgcttttcagttctgtta
aaggcatt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1497
Transcript exons: 30895096-30895198,30895375-30895428,30895891-30896009,30
896151-30896228,30896311-30896434,30896504-30896615,3089
6706-30896823,30896911-30896998,30897072-30897167,308977
63-30897869,30897962-30898097,30898177-30898274,30899042
-30899135,30899220-30899389
CTGCTTGGACGAAGCATCATATTCATCTTGCCAACCTTTGTTAACCTTTTCTATTGATGACACT
TTCCTGTACTTGCTTTTCAGTTCTGTTAAAGGCATTTCTCTTAATGCTTCACCAATAGCAGGTC
GAATTATTTTATACATCCCTTCGATTGAGCCTTCAAAAGCAAGTATGAAATGCCTTCCTCCCAT
CCATTCCCTTTTGGACTCGTAAAACCCATCATTAGAAGAACCAGCACCATCCTTTTGCCTCTCA
TCAAGCATTGATTTTGCCGTCTCCCAAGTAACTCCTCGGTCAATGGTGAAAGTAAAAAGTACAG
TTGACGCGCCTGACAAGCTATCAATGTGAACGGTCTTGGGTGATTCTTTCATTTCAACATTTTT
AGCTTTTATATCAACGATTCCAGAATCCAGCTGCCCTTCTATTCGTGCATTGTGCAAAACAACA
TCAAGTATACTTGTAAAAAGATCAAATAACCTATTCTGGATTTTCGGAGCCAGTCCCAAAAGGC
GGTTAAGAAAACGAGCAACATCATGCATATCTGAGTCAACAATCCGACCAGAAAGCTTCCCAGC
AACTTTTCCATTGCACACTACAGCATCCCTGATAATCCCAACTGATACTAGAGCAGCTTTTGCT
TCAGCAATGAACTCTTGGATGCTAGATTGATTGTCAGAACACCCCGGAGGAACAACTGGAAAAG
AATCCTGCTCCATTATTCCTCTATACATGATGGTTAGGGCTTTTTTCCCATAATTGCTGTCGTA
GTTAAAAGCACTCAGAGAAGGTCCAGCCCTGCGATCTCCTTGCGTTAAAGCTCCTAGAGACTCC
AGTCTTTTTGCTACGATTGATGCAAATCGCTTTTCACCACCAAGATTTGTAAAGAGAAGCCTAT
ATTGTGGTGCAGAAGTTTGATTAGAACGATGAGTTCTCCCAAACTGTTGTATTGCACGATCTGC
ACTCCAAGGGAGCTCAAGTGTTATGTGTACTCTTCTTCTCTGGTTTTTTGCCCTTCTATCAGCA
TGCAGCGAAACGCCAGCTGATCCTGCTTCAGATATAATAGATATTAGTTTTTTGCCATCCATGA
ACTGCTGTTTTTCATGCATATTGATCATCTCCATCGACACTTCTTTCGCATTCCGCGCCTGATA
AACAACGCCTTTTCCGTCAGAAGCTCTTATTAGCATACCACGCCGTCCAGTTATTTCTGCAACA
TTGTCAGGGCCTCCTAGCTGATCAATGATGTCATCAAGAGGATTGTTAGGGAGATCCAAAGAAC
GTATCATATCCAAAATCTTCTTTTTTTTCTCTACTGCAGCATCATACCTCTGTGAAAAATCAGC
TACATGAGCATCTTGTTCATTTTCCTCTCCTTCTAACTTCTTGCATGTGTAGCATGACCAGTCA
TCAGTTAATACCCCAGTCCAAGGTGGTGTCAGACAACCAGGGTGAACATGTCGAGAACAACCAG
AACAATGAAGCAACAGAGTCTTCTC

Genomic sequence CTGCTTGGACGAAGCATCATATTCATCTTGCCAACCTTTGTTAACCTTTTCTATTGATGACACT
TTCCTGTACTTGCTTTTCAGTTCTGTTAAAGGCATTTCTCTGCAATAGAAACATGGAGTGTAAC
CAAAAAAAAAATTAAATAGCATTTTTTATATAAACATATCGTACCTGCTAGGCTACTAGACATG
GTGATTAAACATGAAGCTGTATGCAGTATAAATTTTTCTTACAATAGGTTACACCAGAAAAAAT
ATATAATAATGAACTGCAGATACCTTAATGCTTCACCAATAGCAGGTCGAATTATTTTATACAT
CCCTTCGATTGAGCTGGTTCACAAACAAAATGGAACAAAGAGTCAGGTCATAGCATCACATTTC
AAATCAACTATTTTTGTTGACAAAAGGAAAAACTAGTACTAGCACATTGTATAGTTTCCACTGC
TTTATAGAAATACGAAAATGCTCCTCAGTTGCTAGCAAATAAAGATTTTTTTTCATTTATCTAA
TAAGCGTAGTTTGCAGTTCTCAACTAAATAATGAGGTGCCTTTTCATTTTATTTATTTATTTTG
CTAATCACATTTGGCCAGAATTCATTCAGCGTTAGATTGATTAATATTCCAATTCAGTCTTTTT
CCTCGATACACACGGTATCAATTGCATGGTAAATTTCTACTACATTATTTATCTATTCCTCTAT
TTGAATAAGGGTTTTCAGTTTTTAGCAATGCTAAGTTGCTAACAGATGGCTGATAAGAACTAAA
GAATAAATAAATGATTATCCAACATACCCTTCAAAAGCAAGTATGAAATGCCTTCCTCCCATCC
ATTCCCTTTTGGACTCGTAAAACCCATCATTAGAAGAACCAGCACCATCCTTTTGCCTCTCATC
AAGCATTGATTTTGCCGTCTTTACACGTTCACAAAAGCAATTGAGCAAAAACCATAGAAGTTGC
AGTTTTACAAGAAACATGGACTGTACTTTTAAATACAGCTACAACCATGTCTCTCAAGGAAAAA
CAGAATTCGACTACCAAAGTTGTATGTTTACCTCCCAAGTAACTCCTCGGTCAATGGTGAAAGT
AAAAAGTACAGTTGACGCGCCTGACAAGCTATCAATGTGAACGGTCTGCAAGGAGAAAATGCAT
TAAGAATCTACAGATTAGAAGCACAGAGCAGACAAAGCAAAAAGTTTTCTAAAAGAGCATTGCC
TTGGGTGATTCTTTCATTTCAACATTTTTAGCTTTTATATCAACGATTCCAGAATCCAGCTGCC
CTTCTATTCGTGCATTGTGCAAAACAACATCAAGTATACTTGTAAAAAGATCAAATAACCTGTT
ACATAGAGAATGTGTAAGTATAGTCCAACCATCTCAAGTTACAGGATACTGCATGGCATCTCAC
CTATTCTGGATTTTCGGAGCCAGTCCCAAAAGGCGGTTAAGAAAACGAGCAACATCATGCATAT
CTGAGTCAACAATCCGACCAGAAAGCTTCCCAGCAACTTTTCCATTGCCTGAGGAAAAACGTTA
AATGAGTCCAACACAGTCACAAACACTAAGGTATGGAAGAAAGAAAGTGTCTAATTGTTTCTGG
GTAAACTTACACACTACAGCATCCCTGATAATCCCAACTGATACTAGAGCAGCTTTTGCTTCAG
CAATGAACTCTTGGATGCTAGATTGATTGTCAGAACACCCCGGAGGAACAACTGGAAAAGAATC
CTGGTCATCTTGAAAGTAACTCTTAGAATGGTGAATAAAGCATGAAAAGGAAAACATATTCAAA
AACTATAGTGTAATTATATAAACCTGCTCCATTATTCCTCTATACATGATGGTTAGGGCTTTTT
TCCCATAATTGCTGTCGTAGTTAAAAGCACTCAGAGAAGGTCCAGCCCTGCAGAAGTAGAAGTC
AGTTAAGATATGATTTAGCTGATGTCGATACAAAATTGGTTGAAATCAGCAAAAACCTGCGATC
TCCTTGCGTTAAAGCTCCTAGAGACTCCAGTCTTTTTGCTACGATTGATGCAAATCGCTTTTCA
CCACCAAGATTTGTAAAGAGAAGCCTGCAATTGAGATTCCAAATTTATTTTTAAGATATACATC
TATATAGCAAATGTACATCCATGCCATGTGAACATGTGAAATTAATAGTAAAATAGCGAGTCTG
GATAACCAATATAAAGTAGAATGACTATTATTTTTCCATCCACATCAAATAACCACTTTGCCTC
ATTGTCTCAGCATTTAAGTATTACATGAATATATTGTGTACACAGCACTGGTCCCCAATTCCCA
CCTTCATGCTAGATATTTTTAAAGACTACATAAATAAATTCATGAGACTTCAAATTTCTTTCGT
CAGACAGACACGTCACTAATTGTTACAGGTTCCAGCAGACAGCCATCACATATTATAGCTACAT
ACAATACACTGAAACCAGCAATTTTATCTATATATGTTTGATTTGTGCTTACTTCACTGCTTGA
CAAATTTCAGTCTGCCCTAGCTCTTCATTCATGACTCGTATACAGTACCAGAAGACAATATAAC
GGAAATCCCTATTCTAGCAATTTGTTTTGCTGAATGGCAATACGGACAATCGAAACACAGACCT
ACAAGAAGCTAGAGATGGCTCATATGAGAAATATAAAGCATACCTATATTGTGGTGCAGAAGTT
TGATTAGAACGATGAGTTCTCCCAAACTGTTGTATTGCACGATCTGCACTCCAAGGGAGCTCAA
GTGTTATGTGTACTCTTCTTCTCTGCAAAGTTCATTAAGAAGTTTCATCAAAATTACAACAGAC
CAACCTCTGGTGTATTTGAAACATGTGGATAAAATGAAGAATCATAAAACCTGGTTTTTTGCCC
TTCTATCAGCATGCAGCGAAACGCCAGCTGATCCTGCTTCAGATATAATAGATATTAGTTTTTT
GCCATCCATGAACTGCTGTTTTTCATGCATATTGATCATCTCCATCGACACTTCTTTCCTACAT
ACAGAAAATGCACACGTATGGGATTAGTTGAACCAGAGAAACATAATGCAAAATCACAAGTAAG
CTATCTCACGCATTCCGCGCCTGATAAACAACGCCTTTTCCGTCAGAAGCTCTTATTAGCATAC
CACGCCGTCCAGTTATTTCTGCAACATTGTCAGGGCCTCCTAGCTGCAAAATCCAAATAAAATG
GAAAAATATTAATTATATGTATGGTCCAATAATACTAGAACGAGTTAAAATTAAGATAGGGAAA
AAGATTGTAAAATAATTCAACACAAATTAAACACTGATAAACATATGTCAGGACAATGATTACA
AGCTCATTGCATAATCTTCAGCCAAAATGGGTCTGAAAATGGGAGAACTAACTAATAAACAGGG
ATTGAATATCTATGCAGGAACAATTTAGTTGAGATATGACAGTGGTGCTTAATTCACAAGAGCT
TACTCAAGAAATAAACATATAATTTGACATATCTGACCACCCTTTCTCCTGCTCCAAAATGCAA
CATCATTAACCTACACCTTATTGTGATAATCATCTAACAGACATCCAGAAGATAAGAAAATGGA
AGAGATGTCATGTATATATGAGTTAATGGGTAACAACTCCTAGCTAGCTGCATAAGAATCTTTG
TAATATCTTGATGTCCAAATTTCTTCTACAGCCCAGCCCTGCTGAGCAGGCCTATGCAAGTCTA
GCAGTTCACTTGGATTTGCATCCCAACTTCAGCAAAAAGGATTAGCCCAAAATTGTAATGGTTG
GTCCTCAAACATAATATGCTAGTACTACAGTACTACCACTACTCTGAACTTTGAAATCTGCCCC
TTTCACATCAGTTAACTGTGCAAACAGATGTCAATGCAAGCTCAAAGTTAAAAAATAACCACAG
ATTCAATTATCAACATTTCCAGGTGATGTAAGCCAATATTACCTGATCAATGATGTCATCAAGA
GGATTGTTAGGGAGATCCAAAGAACGTATCATATCCAAAATCTTCTTTTTTTTCTCTACTGCAG
CATCATACCTGACAGCAAGGCACAGGACAAGTATTTATATAATTGGGTGTGGGCATTTTATGGG
GATCTTGATTTGTCAAACGCACACGTACCTCTGTGAAAAATCAGCTACATGAGCATCTTGTTCA
TTTTCCTCTCCTTCTAACTTCTTGCATGTGTAGCATGACCAGTCATCAGTTAATACCCCAGTCC
AAGGTGGTGTCAGACAACCAGGGTGAACATGTCGAGAACAACCAGAACAATGAAGCAACAGAGT
CTTCTC
Conservation Information
Conserved circRNAs NA
PMCS 0.219181792
Functional Information
Coding potential Y
Potential coding position 30899349-30895149(+)
30899282-30895136(+)
30899097-30895098(-)
30895123-30899331(-)
Potential amino acid sequence MSRTTRTMKQQSLLLLGRSIIFILPTFVNLFY*(+)
MCSMTSHQLIPQSKVVSDNQGEHVENNQNNEATESSPAWTKHHIHLANLC*(+)
MIRSLDLPNNPLDDIIDQLGGPDNVAEITGRRGMLIRASDGKGVVYQARNAKEVSMEMINMHEK
QQFMDGKKLISIISEAGSAGVSLHADRRAKNQRRRVHITLELPWSADRAIQQFGRTHRSNQTSA
PQYRLLFTNLGGEKRFASIVAKRLESLGALTQGDRRAGPSLSAFNYDSNYGKKALTIMYRGIME
QDSFPVVPPGCSDNQSSIQEFIAEAKAALVSVGIIRDAVVCNGKVAGKLSGRIVDSDMHDVARF
LNRLLGLAPKIQNRLFDLFTSILDVVLHNARIEGQLDSGIVDIKAKNVEMKESPKTVHIDSLSG
ASTVLFTFTIDRGVTWETAKSMLDERQKDGAGSSNDGFYESKREWMGGRHFILAFEGSIEGMYK
IIRPAIGEALREMPLTELKSKYRKVSSIEKVNKGWQDEYDASSKQEKTLLLHCSGCSRHVHPGC
LTPPWTGVLTDDWSCYTCKKLEGEENEQDAHVADFSQRYDAAVEKKKKILDMIRSLDLPNNPLD
DIIDQLGGPDNVAEITGRRGMLIRASDGKGVVYQARNAKEVSMEMINMHEKQQFMDGKKLISII
SEAGSAGVSLHADRRAKNQRRRVHITLELPWSADRAIQQFGRTHRSNQTSAPQYRLLFTNLGGE
KRFASIVAKRLESLGALTQGDRRAGPSLSAFNYDSNYGKKALTIMYRGIMEQDSFPVVPPGCSD
NQSSIQEFIAEAKAALVSVGIIRDAVVCNGKVAGKLSGRIVDSDMHDVARFLNRLLGLAPKIQN
RLFDLFTSILDVVLHNARIEGQLDSGIVDIKAKNVEMKESPKTVHIDSLSGASTVLFTFTIDRG
VTWETAKSMLDERQKDGAGSSNDGFYESKREWMGGRHFILAFEGSIEGMYKIIRPAIGEALREM
PLTELKSKYRKVSSIEKVNKGWQDEYDASSKQEKTLLLHCSGCSRHVHPGCLTPPWTGVLTDDW
SCYTCKKLEGEENEQDAHVADFSQRYDAAVEKKKKILDMIRSLDLPNNPLDDIIDQLGGPDNVA
EITGRRGMLIRASDGKGVVYQARNAKEVSMEMINMHEKQQFMDGKKLISIISEAGSAGVSLHAD
RRAKNQRRRVHITLELPWSADRAIQQFGRTHRSNQTSAPQYRLLFTNLGGEKRFASIVAKRLES
LGALTQGDRRAGPSLSAFNYDSNYGKKALTIMYRGIMEQDSFPVVPPGCSDNQSSIQEFIAEAK
AALVSVGIIRDAVVCNGKVAGKLSGRIVDSDMHDVARFLNRLLGLAPKIQNRLFDLFTSILDVV
LHNARIEGQLDSGIVDIKAKNVEMKESPKTVHIDSLSGASTVLFTFTIDRGVTWETAKSMLDER
QKDGAGSSNDGFYESKREWMGGRHFILAFEGSIEGMYKIIRPAIGEALREMPLTELKSKYRKVS
SIEKVNKGWQDEYDASSKQEKTLLLHCSGCSRHVHPGCLTPPWTGVLTDDWSCYTCKKLEGEEN
EQDAHVADFSQRYDAAVEKKKKILDMIRSLDLPNNPLDDIIDQLGGPDNVAEITGRRGMLIRAS
DGKGVVYQARNAKEVSMEMINMHEKQQFMDGKKLISIISEAGSAGVSLHADRRAKNQRRRVHIT
LELPWSADRAIQQFGRTHRSNQTSAPQYRLLFTNLGGEKRFASIVAKRLESLGALTQGDRRAGP
SLSAFNYDSNYGKKALTIMYRGIMEQDSFPVVPPGCSDNQSSIQEFIAEAKAALVSVGIIRDAV
VCNGKVAGKLSGRIVDSDMHDVARFLNRLLGLAPKIQNRLFDLFTSILDVVLHNARIEGQLDSG
IVDIKAKNVEMKESPKTVHIDSLSGASTVLFTFTIDRGVTWETAKSMLDERQKDGAGSSNDGFY
ESKREWMGGRHFILAFEGSIEGMYKIIRPAIGEALREMPLTELKSKYRKVSSIEKVNKGWQDEY
DASSKQ(-)
MNMMLRPSRRRLCCFIVLVVLDMFTLVV*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017