Detail information of Os04g0609700_circ_g.8


General Information
CircRNA Name Os04g0609700_circ_g.8
ID in PlantcircBase osa_circ_025163
Alias NA
Organism Oryza sativa
Position chr4: 30899042-30902995  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0609700
Parent gene annotation Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os04
t0609700-01);Similar to H0702G05.10 protein. (Os04t0609700-02)
Parent gene strand -
Alternative splicing Os04g0609700_circ_g.1 Os04g0609700_circ_g.2 Os04g0609700_circ_g.3 Os04g0609700_circ_g.4 Os04g0609700_circ_g.5 Os04g0609700_circ_g.6 Os04g0609700_circ_g.7 Os04g0609700_circ_g.9 Os04g0609700_circ_igg.1 Os04g0609700_circ_g.2
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0609700-01:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAGACCAACCACCACACACTTATTCTCTGCCAGGGCCTCCTTAGCCAACTTCACAACAGCAGG
TACTTTTGCAGACATGCACATATGCCTGAAGAAACGctgatcaatgatgtcatcaagaggattg
ttagggagatccaaagaacgtatcatatccaaaatcttcttttttttctctactgcagcatcat
acctgaca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGATCAATGATGTCATCAAGAGGATTGTTAGGGAGATCCAAAGAACGTATCATATCCAAAATC
TTCTTTTTTTTCTCTACTGCAGCATCATACCTGACAGCAAGGCACAGGACAAGTATTTATATAA
TTGGGTGTGGGCATTTTATGGGGATCTTGATTTGTCAAACGCACACGTACCTCTGTGAAAAATC
AGCTACATGAGCATCTTGTTCATTTTCCTCTCCTTCTAACTTCTTGCATGTGTAGCATGACCAG
TCATCAGTTAATACCCCAGTCCAAGGTGGTGTCAGACAACCAGGGTGAACATGTCGAGAACAAC
CAGAACAATGAAGCAACAGAGTCTTCTCCTGAAAATTAAGATATTGTTGTGTAAAAACTATAAA
TGACAGTGCACTTCCAAAGAGATTTAACATTAACGGACAATATATTTTCCTGTAAGCATTCTAC
AAATAATAATCAATTGTGGTATGGTTACCAGCTTGAACTATAGGAAATCGTAATCAAATACTAA
ATAGTTTCAGCAAATACAAAAGAAAGAATTGCACATACAGAAAATGTAACCAGCTAGCAAAAAG
AACTGAGGTCAAAGAACATGGCACAGACCGAATGTAACATTATTGTATATACTACCTCCGTCCC
AAAATATAGCAACTTCTAGCTATGTATCTGGACAAACATTTATCTAGATACATAGCCAAAAGTT
TCTAAATTTTGGGATGGAGAGAGTAATAATTTTTGGTATTACGGATCTGTATATGACATTATTG
TACTAAATAATAAGCCATAAGAGTCACCTCCTCTGTGTTACAGATTTGACACATGTGAAACTCC
TCATCAGACTCTGTCGATCCATGATCTGACTCAGCTGTAACATATACATTAGGTTAAAATTATC
GAATGAGTGAAGTCAGAATAGTTGATCACAAATTCACTGTACTGTTTAAAAATTTTAAACATCA
TGCTATAGTGAAGCATTGATTGCAGCTGGTCAGAGCAATTATCTCCAGCAGCTATACAGCTGCA
GCAGACCATAACAAATTAACAACTACCATAATGCATGTGCAAATAATTTTCAGCCTTTTGGGGT
AGTCGTTAGTAAATAGTCCTGTTTTTGAGAAGAACTTTGTTGCACGTTGTATTTGGCATCTATT
TTATTATTAAGAACATGGTGAAAAGGAGCTTCCGTGTAAGCTGTCAAGGGCTAAAAATTACCAT
GTTATGAAAAAAGAGATTAATCTATGTGTTCATTCATCATGGTGGGTCCAGATTATAATGGTGT
ATGTTAAATGGATATATATTATTACACTAAAACCGTATAGGAAACAAAATTGTATTTTCAGAAA
GAAACCAAACAGTTGTATAGCAAATACAACTATACTTTCAAATAAACTACAGTCTAGCCTGCAC
AAACGTGCAGGAAATTCGGCTAGTTCCTGTTCTTAGTATACAAAATATAGCATTCAACACTCCA
TATTCACTGCCAACTAGCGATCTCATCCAATCATCTTTGGGCAGGATGGGGTGGGGAACTCATT
CAATTTGGTGCAAACGCTTCGACCTAGTCAACTACCATTTGACATGACCACACGGCAAGGACAA
CCCGCAAGTCACTACAACAGATTTAGCAGGTAAAAGGTTGATCCTACAAAAATGGACGTATAGA
GGAACTCATTCCCTTTATGCCCTATAGAGTGTTCCATGTCTGTGCCTATGAAGCACTAAGTAAT
CTAAACCCAATAAGTGATTAAGACAGAAAGCTCCTAGATATAAGGCAAGTTCCATGCTTCTCTT
GCACCGTTGTTAGCTTTTTGCTTCAGTATTCATCTTTCCGTTATTTTTTCCCAGTTGTGACATT
CATATCATGCCACCCTATTCACTCCTACATTCATTACTTTCTGTTTTAAAGATGTTTACTATGA
GTATTAAGTTTATTTCTGTAAATATACTTGAGCAAAGTATGCCTGCTAGATCATGTTATATAGT
ACAAGAGTACCAGATGCAACAAGTAAACAATTAGCTGATGTACAGAAACAGTCTGTGGTTTAAA
ACATTGAATAAGAAACTAAAACTGAAAAAAAAAAGCATGGTGAGATATCATTCTTATGATTCAG
CAGTTCATAAGACTTGAATTCGTGATCTAGTGTCTCAACTCTTAACTAGCTTGCAACAGCCCCC
CTAAAAAAATGCTTGGCTAACACCACCAGTGACATATCTAGGCACCATCACCGCATCCACGGAT
GACCAAATTTGAGCTCAACGTGGTCGATCTAAGTATGGTGAGGTGGATCTGACAAGCTGGCAAC
CACATCAACACAACTAGGTTGTCCTCTCATAGGTTGGCCCCAGAAGACACTTTGCAACAAGCTG
ATCATCCACAAATGCCTGAAACAAGGGATGGCTAGTGTCGGGTCCTGGACCCGTTACTGTTACG
CTCCATGTACTCCTTTGGGCAGATGTTTATATGCTAAACAAATTTAGTAGTAAAGTTCTCTTTT
GCCCACTTCAATACAAGGCTATTAATAACCCGCTTCCCCTGACAATTTTGCAGCTCCGCCTGAG
TATATTACCAGACCACACCATCCCTTTCCTCCTTGAATTGTGCACAAAGGCCATCAGTTGAAGG
GCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTTCCACGTCTTACCCGAGCATC
TAAGTGACAGGGAGCAAGAGATGGCTGACATCAAACAGTTGCCCATGCCATAAAAGGTGTATCC
AATGCCATGATTAATGAAACTACTTTTTCAATCACCAAATGTTCCATGATATTCTCGCCAATGA
AATTGCCAGGCTGCCAGGTGTATCCAGGACCAGAACCATTGATACAAATATTTAAGTATTTCCA
GAATAAAAGAAATTACAATCTATCATACTCTGCGAATAAGATTACCAGGAAAAATTATATAAAT
ATCTGGTCAAAAACAAACTAGAAGTCCTTGATTTAAATTAACATTTCACATTAGTATGAACTAT
ATATATCAAAGAAATTAGCACGATCTGCAACTGCAGTAAGCAATAAAGATTAGCCACATGGTTG
GCACCTGAAACAAAAATCAAGTAGTTCCCAACAAACTTACATGGAGAGTAATCATCACTGTCAT
CATCACTCACTTCTACCAGTTTTGCTACTTTTCTAACACGTCCTTTAAATGATACATCTGGGGC
AGAATGCCGCTTACGGTGAATTTCTGTGACTTTTTCTTCACCTAAAAAAATATACACAAAAATA
ATAATCAATAGTAGAAGACCAGGCAACTAGAGCCGTATGAGTTATAAACAAACAAGATGAGATA
ATGTAAGTGAATATGCAAAATAGCATTTTCTATAGGATACTAAGCCCAATTTCATAAGTGAAAA
ATGGCCAAATTCCAATAAATTTGCTTTTGTTTATGCAAGCAGAAAGGGCTGACAAAATATGAGA
TGTACAGTTTATTAGGAAAAGAGAAAGACCATTTGACTTTATACTACCTTCTAGGTAGTAGCAT
TTCACTTAGTAGACATGGAAATTGCATTAAAGATATGGTAAAACTTGAGATTAGTATGATGAAA
CAGTCAGCACGGACCTTGTTGAAAAGAATCAGGCTTCGGAGGTAGAGGGTAATTTTCTTCTACC
AGCTTTAGAAGCAGCTCCCGAGGACCAGAAACAAAGTCTTCCATTTCAACACCCTGGTTCATAT
TGGAAGCAATCAATAATTCGGAGTATTAGGTCAGTTAGGAAGGCGCTACAATATGATGAAGAGA
CAAATAAAATGTTCCTTTGGAAATATAAGCTCACATATTTTGTGATAGCTTCTTCTGTTCGAGC
CTCTCCAGTGCTCTGAAGACCAACCACCACACACTTATTCTCTGCCAGGGCCTCCTTAGCCAAC
TTCACAACAGCAGGTACTTTTGCAGACATGCACATATGCCTGAAGAAACG
Conservation Information
Conserved circRNAs NA
PMCS 0.107780024
Functional Information
Coding potential Y
Potential coding position 30902982-30899224(+)
30902982-30899044(-)
30899060-30902949(-)
Potential amino acid sequence MPEETLINDVIKRIVREIQRTYHIQNLLFFLYCSIIPL*(+)
MCMSAKVPAVVKLAKEALAENKCVVVGLQSTGEARTEEAITKYGVEMEDFVSGPRELLLKLVEE
NYPLPPKPDSFQQGEEKVTEIHRKRHSAPDVSFKGRVRKVAKLVEVSDDDSDDYSPSESDHGST
ESDEEFHMCQICNTEEEKTLLLHCSGCSRHVHPGCLTPPWTGVLTDDWSCYTCKKLEGEENEQD
AHVADFSQRYDAAVEKKKKILDMIRSLDLPNNPLDDIIDQRFFRHMCMSAKVPAVVKLAKEALA
ENKCVVVGLQSTGEARTEEAITKYGVEMEDFVSGPRELLLKLVEENYPLPPKPDSFQQGEEKVT
EIHRKRHSAPDVSFKGRVRKVAKLVEVSDDDSDDYSPSESDHGSTESDEEFHMCQICNTEEEKT
LLLHCSGCSRHVHPGCLTPPWTGVLTDDWSCYTCKKLEGEENEQDAHVADFSQRYDAAVEKKKK
ILDMIRSLDLPNNPLDDIIDQRFFRHMCMSAKVPAVVKLAKEALAENKCVVVGLQSTGEARTEE
AITKYGVEMEDFVSGPRELLLKLVEENYPLPPKPDSFQQGEEKVTEIHRKRHSAPDVSFKGRVR
KVAKLVEVSDDDSDDYSPSESDHGSTESDEEFHMCQICNTEEEKTLLLHCSGCSRHVHPGCLTP
PWTGVLTDDWSCYTCKKLEGEENEQDAHVADFSQRYDAAVEKKKKILDMIRSLDLPNNPLDDII
DQRFFRHMCMSAKVPAVVKLAKEALAENKCVVVGLQSTGEARTEEAITKYGVEMEDFVSGPREL
LLKLVEENYPLPPKPDSFQQGEEKVTEIHRKRHSAPDVSFKGRVRKVAKLVEVSDDDSDDYSPS
ESDHGSTESDEEFHMCQICNTEEEKTLLLHCSGCSRHVHPGCLTPPWTGVLTDDWSCYTCKKLE
GEENEQDAHVADFSQRYDAAVEKKKKILDMIRSLDLPNNPLDDIIDQ(-)
MTSLISVSSGICACLQKYLLL*(-)
Sponge-miRNAs osa-miR2922
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017