Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Os04g0609700_circ_g.8 |
ID in PlantcircBase | osa_circ_025163 |
Alias | NA |
Organism | Oryza sativa |
Position | chr4: 30899042-30902995 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os04g0609700 |
Parent gene annotation |
Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os04 t0609700-01);Similar to H0702G05.10 protein. (Os04t0609700-02) |
Parent gene strand | - |
Alternative splicing | Os04g0609700_circ_g.1 Os04g0609700_circ_g.2 Os04g0609700_circ_g.3 Os04g0609700_circ_g.4 Os04g0609700_circ_g.5 Os04g0609700_circ_g.6 Os04g0609700_circ_g.7 Os04g0609700_circ_g.9 Os04g0609700_circ_igg.1 Os04g0609700_circ_g.2 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os04t0609700-01:6 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.107780024 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
30902982-30899224(+) 30902982-30899044(-) 30899060-30902949(-) |
Potential amino acid sequence |
MPEETLINDVIKRIVREIQRTYHIQNLLFFLYCSIIPL*(+) MCMSAKVPAVVKLAKEALAENKCVVVGLQSTGEARTEEAITKYGVEMEDFVSGPRELLLKLVEE NYPLPPKPDSFQQGEEKVTEIHRKRHSAPDVSFKGRVRKVAKLVEVSDDDSDDYSPSESDHGST ESDEEFHMCQICNTEEEKTLLLHCSGCSRHVHPGCLTPPWTGVLTDDWSCYTCKKLEGEENEQD AHVADFSQRYDAAVEKKKKILDMIRSLDLPNNPLDDIIDQRFFRHMCMSAKVPAVVKLAKEALA ENKCVVVGLQSTGEARTEEAITKYGVEMEDFVSGPRELLLKLVEENYPLPPKPDSFQQGEEKVT EIHRKRHSAPDVSFKGRVRKVAKLVEVSDDDSDDYSPSESDHGSTESDEEFHMCQICNTEEEKT LLLHCSGCSRHVHPGCLTPPWTGVLTDDWSCYTCKKLEGEENEQDAHVADFSQRYDAAVEKKKK ILDMIRSLDLPNNPLDDIIDQRFFRHMCMSAKVPAVVKLAKEALAENKCVVVGLQSTGEARTEE AITKYGVEMEDFVSGPRELLLKLVEENYPLPPKPDSFQQGEEKVTEIHRKRHSAPDVSFKGRVR KVAKLVEVSDDDSDDYSPSESDHGSTESDEEFHMCQICNTEEEKTLLLHCSGCSRHVHPGCLTP PWTGVLTDDWSCYTCKKLEGEENEQDAHVADFSQRYDAAVEKKKKILDMIRSLDLPNNPLDDII DQRFFRHMCMSAKVPAVVKLAKEALAENKCVVVGLQSTGEARTEEAITKYGVEMEDFVSGPREL LLKLVEENYPLPPKPDSFQQGEEKVTEIHRKRHSAPDVSFKGRVRKVAKLVEVSDDDSDDYSPS ESDHGSTESDEEFHMCQICNTEEEKTLLLHCSGCSRHVHPGCLTPPWTGVLTDDWSCYTCKKLE GEENEQDAHVADFSQRYDAAVEKKKKILDMIRSLDLPNNPLDDIIDQ(-) MTSLISVSSGICACLQKYLLL*(-) |
Sponge-miRNAs | osa-miR2922 |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Chu et al., 2017 |