Detail information of Os04g0609700_circ_g.9


General Information
CircRNA Name Os04g0609700_circ_g.9
ID in PlantcircBase osa_circ_025164
Alias NA
Organism Oryza sativa
Position chr4: 30899422-30899836  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os04g0609700
Parent gene annotation Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os04
t0609700-01);Similar to H0702G05.10 protein. (Os04t0609700-02)
Parent gene strand -
Alternative splicing Os04g0609700_circ_g.1 Os04g0609700_circ_g.2 Os04g0609700_circ_g.3 Os04g0609700_circ_g.4 Os04g0609700_circ_g.5 Os04g0609700_circ_g.6 Os04g0609700_circ_g.7 Os04g0609700_circ_g.8 Os04g0609700_circ_igg.1 Os04g0609700_circ_g.2
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   CT-TA
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCAAAAGTTTCTAAATTTTGGGATGGAGAGAGTAATAATTTTTGGTATTACGGATCTGTATATG
ACATTATTGTACTAAATAATAAGCCATAAGAGTCACtaaatgacagtgcacttccaaagagatt
taacattaacggacaatatattttcctgtaagcattctacaaataataatcaattgtggtatgg
ttaccagc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TAAATGACAGTGCACTTCCAAAGAGATTTAACATTAACGGACAATATATTTTCCTGTAAGCATT
CTACAAATAATAATCAATTGTGGTATGGTTACCAGCTTGAACTATAGGAAATCGTAATCAAATA
CTAAATAGTTTCAGCAAATACAAAAGAAAGAATTGCACATACAGAAAATGTAACCAGCTAGCAA
AAAGAACTGAGGTCAAAGAACATGGCACAGACCGAATGTAACATTATTGTATATACTACCTCCG
TCCCAAAATATAGCAACTTCTAGCTATGTATCTGGACAAACATTTATCTAGATACATAGCCAAA
AGTTTCTAAATTTTGGGATGGAGAGAGTAATAATTTTTGGTATTACGGATCTGTATATGACATT
ATTGTACTAAATAATAAGCCATAAGAGTCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.23346994
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017