Detail information of Os10g0488800_circ_g.5


General Information
CircRNA Name Os10g0488800_circ_g.5
ID in PlantcircBase osa_circ_007218
Alias NA
Organism Oryza sativa
Position chr10: 18535295-18537298  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os10g0488800
Parent gene annotation Myosin head, motor region domain containing protein. (Os10t04888
00-01);Similar to Myosin head family protein, expressed. (Os10t0
488800-02)
Parent gene strand +
Alternative splicing Os10g0488800_circ_igg.1 Os10g0488800_circ_igg.2 Os10g0488800_circ_g.1 Os10g0488800_circ_g.2 Os10g0488800_circ_g.3 Os10g0488800_circ_g.4 Os10g0488800_circ_g.6 Os10g0488800_circ_g.7 Os10g0488800_circ_g.8
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os10t0488800-02:6
Os10t0488800-01:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCATCCAAAATGCTTTCTCAATCTGATAATCCGTTACCTGTTCCATATAGAAATAGTGCTGCT
GACTCACAGAAGTTAAGTGTTGCGATGAAGTTTAAGcggcagaaacggtcgcaagacttcttgg
ctgcagtattgaagatctcaatttagctttgtcgaagaggcacatgaaagttaataatgaaaat
attgtaca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGGCAGAAACGGTCGCAAGACTTCTTGGCTGCAGTATTGAAGATCTCAATTTAGCTTTGTCGAA
GAGGCACATGAAAGTTAATAATGAAAATATTGTACAGAAACTCACCCTTTCACAGGTTAGTGAG
TTTTGTTCTTAACTAAATGCAAGGTAGCAACAACAGCCATGAAAGTATTGTTAAATTCACAGTT
CTGCACCCACCTCTTTGAATATTGCAGGCAATCGACACAAGAGATGCGTTGGCCAAGTCACTCT
ATGCCAGTTTGTTTGAGTGGCTTGTTGAACAAATTAACAAGTCTCTTTCAGTTGGCAAGCGTCG
AACTGGGAGATCAATCAGCATTCTTGATATCTATGGCTTTGAATCATTCGATGTAATGTACTTC
CATTTGACATGCTGTCATCATATTTTAATTGGCAAATGGTTTCTCATGTCATAACACAAAATTG
CAGAGGAACAGTTTTGAACAGTTCTGTATTAACTATGCTAATGAAAGGCTCCAACAACATTTCA
ATCGCCATTTGTTTAAGCTTGAACAAGAGGTGAGCTATTGCTATGGTTAAAATCCAGAATATAT
GTTTCAGGATTGCAACCTTCAACCTCTTATTTTTTTCCCATCATCGGCAGTGGCACTTTTTTAG
AGTAATGATTTTCTTGTCATGCTATGAAGTTCCAATGCATATTTTTTTTCCACAAGATCTGGTG
ATCTTCTCTTTCTCTTTGTGCACTTCTTGAACATGCTTTTCTGTGCTTTTTGTTAACTAAATGG
AAGACTTGGTAGGTGTTACTAATTCACAGCAGAGATTTTTCTCTAAATTTTCTCTGATGTCTTC
GAACAGGAATACGTTGAAGATGGCATTGACTGGGCAAAGGTTGAGTTTGAGGACAATCAGAACT
GTTTGAATCTCTTTGAGAAAGTATGGGCCACTACATCTTGCCTGCTACTTATATTTATCTATAG
AGAGTACTGTGCATTCATTGTTTAGTAGCACTGCATTAAAGTTTACTACCTAAGTTACTATAGA
CATAAGCACGTGAATGGTGGTGAACTACTGCCTAAAGCACACATGGATGAATTTACTATGGGTG
AGGGAAACCTAGTCCATTTCTTTCAACTTTTGTAATGTGTCGCTGCAATTTTTTCTTGTTATCT
TTTATGCAGACGCATCTTTACTACTAGTTAATTGTATGTGCTTTGCTAAAGGATAAAATAAACT
ATACCATCTGATGTGTTGACTTACCATCATTAGTTTGGTCCGCTTCACATCCTTGGTTCCACTT
CTGTGGCTAGTATCATCATCTGCTGCTGTGTTCTTAGCATTGCTTCCACACCCAGTCGAATTTT
GAAGGAGATTGTTGGGATATAAGTATATATGTGCTAGTTATTTGCTTGTTTGGAGGTGTTTTTT
TCTCAACATAAAAGGACAGCTGTTTTGTTAGAAAGATATTTAAGTTCACTTGGTTTTATTATCT
GTGTAAATTGGCTTAAAAACAGCATACTAATATGCTAGTTCTTACTATCTAACGTTCTTTATCT
CATCTACATTACTGGATATAGAAGCCACTGGGGTTGTTGTCTCTGCTAGATGAAGAATCTACCT
TCCCCAATGCCACAGATCTTACTTTTGCGAACAAGCTTAAGCAACATCTGAACAATAATTCTTG
CTTCCGAGGAGAAAGAGGCAAGGCTTTTGCAGTCCGTCACTATGCAGGAGAGGTTGGGAATTGA
CACTTATCCACAGCTGTTTACATCATGTTTCTTTTATCATGTGTTAACTTCATTTATCTTCTTG
ATAATCAGGTGGCTTATGACACGTCAGGTTTTCTAGAGAAGAATAGAGATTTATTGCACATGGA
CTCAATTCAGTTCCTTGCCAAATGCAAATCCTCACTACCACAAATGTTTGCATCCAAAATGCTT
TCTCAATCTGATAATCCGTTACCTGTTCCATATAGAAATAGTGCTGCTGACTCACAGAAGTTAA
GTGTTGCGATGAAGTTTAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.174872563
Functional Information
Coding potential Y
Potential coding position 18535367-18535345(+)
18535369-18537296(-)
Potential amino acid sequence MKVNNENIVQKLTLSQAIDTRDALAKSLYASLFEWLVEQINKSLSVGKRRTGRSISILDIYGFE
SFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYVEDGIDWAKVEFEDNQNCLNLFEKKPLGL
LSLLDEESTFPNATDLTFANKLKQHLNNNSCFRGERGKAFAVRHYAGEVAYDTSGFLEKNRDLL
HMDSIQFLAKCKSSLPQMFASKMLSQSDNPLPVPYRNSAADSQKLSVAMKFKRQKRSQDFLAAV
LKISI*(+)
MCLFDKAKLRSSILQPRSLATVSAA*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017