Detail information of Os10g0488800_circ_g.2


General Information
CircRNA Name Os10g0488800_circ_g.2
ID in PlantcircBase osa_circ_007215
Alias NA
Organism Oryza sativa
Position chr10: 18534258-18534479  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os10g0488800
Parent gene annotation Myosin head, motor region domain containing protein. (Os10t04888
00-01);Similar to Myosin head family protein, expressed. (Os10t0
488800-02)
Parent gene strand +
Alternative splicing Os10g0488800_circ_igg.1 Os10g0488800_circ_igg.2 Os10g0488800_circ_g.1 Os10g0488800_circ_g.3 Os10g0488800_circ_g.4 Os10g0488800_circ_g.5 Os10g0488800_circ_g.6 Os10g0488800_circ_g.7 Os10g0488800_circ_g.8
Support reads 1
Tissues shoot, root
Exon boundary   No-No
Splicing signals   AC-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTTCACTGTTGACAGTTCTCTGTTTCTTCTTTGTTGCTCATCTATTTTGCTCTGTGGACAGTA
CTTGGCAAGAGCAAACCATTGTTACCTTGTAAACTTgtacatatgacagtgtctgattatacca
tcacaggcttgtttttagtatatcgtatcttttctatgtattgaaagatttcttgtctgtctcg
ctcagttt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 222
Transcript exons: 18534258-18534479
GTACATATGACAGTGTCTGATTATACCATCACAGGCTTGTTTTTAGTATATCGTATCTTTTCTA
TGTATTGAAAGATTTCTTGTCTGTCTCGCTCAGTTTTTAACACAGATTCTATGCTACGTTTTCA
CTGTTGACAGTTCTCTGTTTCTTCTTTGTTGCTCATCTATTTTGCTCTGTGGACAGTACTTGGC
AAGAGCAAACCATTGTTACCTTGTAAACTT

Genomic sequence GTACATATGACAGTGTCTGATTATACCATCACAGGCTTGTTTTTAGTATATCGTATCTTTTCTA
TGTATTGAAAGATTTCTTGTCTGTCTCGCTCAGTTTTTAACACAGATTCTATGCTACGTTTTCA
CTGTTGACAGTTCTCTGTTTCTTCTTTGTTGCTCATCTATTTTGCTCTGTGGACAGTACTTGGC
AAGAGCAAACCATTGTTACCTTGTAAACTT
Conservation Information
Conserved circRNAs NA
PMCS 0.242222222
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017